RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 HSF4Q9ULV5 492 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 ZNF256Q9Y2P7 627 aaPredicted RBP10.64□□□□□ -0.71
CCDC40-216ENST00000576241 A3GALT2U3KPV4 340 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 U3KQK5 164 aa10.64□□□□□ -0.71
CCDC40-216ENST00000576241 LCE6AA0A183 80 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 RGS10O43665 173 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 LY86O95711 162 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 AQP4P55087 323 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 RPS25P62851 125 aaKnown RBP10.63□□□□□ -0.71
CCDC40-216ENST00000576241 NDPQ00604 133 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 TMEM267Q0VDI3 215 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-216ENST00000576241 MLLT11Q13015 90 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-216ENST00000576241 TPBGQ13641 420 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 PYHIN1Q6K0P9 492 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 FAM89BQ8N5H3 189 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 OR56B1Q8NGI3 324 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 RNF5Q99942 180 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 C11orf54Q9H0W9 315 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-216ENST00000576241 Q9N2K0 584 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 ISYNA1Q9NPH2 558 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 ZNF221Q9UK13 617 aa10.63□□□□□ -0.71
CCDC40-216ENST00000576241 AK6Q9Y3D8 172 aaKnown RBP10.63□□□□□ -0.71
CCDC40-216ENST00000576241 LSM4Q9Y4Z0 139 aaKnown RBP10.63□□□□□ -0.71
CCDC40-216ENST00000576241 PCLOQ9Y6V0 5065 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 OVOL1O14753 267 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 CPEP16870 476 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 CALRP27797 417 aaKnown RBP10.62□□□□□ -0.71
CCDC40-216ENST00000576241 CD40LGP29965 261 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 VEGFCP49767 419 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 CRIP2P52943 208 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-216ENST00000576241 MRPS15P82914 257 aaKnown RBP10.62□□□□□ -0.71
CCDC40-216ENST00000576241 C19orf54Q5BKX5 351 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 ASPHD1Q5U4P2 390 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 TMEM91Q6ZNR0 172 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 ZNF429Q86V71 674 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 OR5AN1Q8NGI8 311 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 DCUN1D4Q92564 292 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 ARHGAP5-AS1Q96IT6 56 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 TSNAXQ99598 290 aaKnown RBP10.62□□□□□ -0.71
CCDC40-216ENST00000576241 GFI1Q99684 422 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 CMSS1Q9BQ75 279 aaKnown RBP10.62□□□□□ -0.71
CCDC40-216ENST00000576241 AGMATQ9BSE5 352 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 DUSP21Q9H596 190 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 METTL1Q9UBP6 276 aaKnown RBP10.62□□□□□ -0.71
CCDC40-216ENST00000576241 NKX1-2Q9UD57 310 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-216ENST00000576241 FBXO7Q9Y3I1 522 aa10.62□□□□□ -0.71
CCDC40-216ENST00000576241 LINC01619G3V211 115 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 SOX15O60248 233 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 SPDEFO95238 335 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 APOA2P02652 100 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 LGALS1P09382 135 aaKnown RBP10.61□□□□□ -0.71
CCDC40-216ENST00000576241 SCTP09683 121 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 PSMD7P51665 324 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 ACTBL2Q562R1 376 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 CD200R1LQ6Q8B3 271 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 UNQ5815/PRO19632Q6UWF5 114 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 PPP1R27Q86WC6 154 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 DRAXINQ8NBI3 349 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-216ENST00000576241 PTX4Q96A99 478 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 FAM3DQ96BQ1 224 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 CLCC1Q96S66 551 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 PECRQ9BY49 303 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 ALX4Q9H161 411 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-216ENST00000576241 ACOT13Q9NPJ3 140 aa10.61□□□□□ -0.71
CCDC40-216ENST00000576241 LYSTQ99698 3801 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 FOXI3A8MTJ6 420 aaPredicted RBP10.6□□□□□ -0.71
CCDC40-216ENST00000576241 TRDCB7Z8K6 153 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 FCN1O00602 326 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 DENRO43583 198 aaKnown RBP10.6□□□□□ -0.71
CCDC40-216ENST00000576241 SAP30O75446 220 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 SERPINB10P48595 397 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 TMEM50BP56557 158 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 CLDN12P56749 244 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 RPS16P62249 146 aaKnown RBP10.6□□□□□ -0.71
CCDC40-216ENST00000576241 FABP5Q01469 135 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 PSG5Q15238 335 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 C2orf76Q3KRA6 126 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 ZNF562Q6V9R5 426 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 PRSS48Q7RTY5 328 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 PDPNQ86YL7 162 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 CASTOR1Q8WTX7 329 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 NRG4Q8WWG1 115 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 MGLLQ99685 303 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 FAM103A1Q9BTL3 118 aaKnown RBP10.6□□□□□ -0.71
CCDC40-216ENST00000576241 TOLLIPQ9H0E2 274 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 VCX3BQ9H321 246 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 GAB2Q9UQC2 676 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 NUBP2Q9Y5Y2 271 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 SMAD5-AS1Q9Y6J3 95 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 V9GY05 133 aa10.6□□□□□ -0.71
CCDC40-216ENST00000576241 ERICH4A6NGS2 130 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 M0R1X1 148 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 CA2P00918 260 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 IGKV1-16P04430 117 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 TFAP2AP05549 437 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 CD3GP09693 182 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 EGR2P11161 476 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-216ENST00000576241 CRHBPP24387 322 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 SLURP1P55000 103 aa10.59□□□□□ -0.71
CCDC40-216ENST00000576241 TPPP2P59282 170 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms