RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CTLA4P16410 223 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 GPR183P32249 361 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 KLF3P57682 345 aaPredicted RBP4.89□□□□□ -1.63
VPS53-212ENST00000572259 RAB4BP61018 213 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 LCN6P62502 163 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 RPL31P62899 125 aaKnown RBP4.89□□□□□ -1.63
VPS53-212ENST00000572259 ECH1Q13011 328 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 CLEC12AQ5QGZ9 265 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 UGT2A3Q6UWM9 527 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 PRSS48Q7RTY5 328 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 WDFY1Q8IWB7 410 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 VKORC1L1Q8N0U8 176 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 SVOPLQ8N434 492 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 DUSP18Q8NEJ0 188 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 OR9Q2Q8NGE9 314 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 NABP1Q96AH0 204 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 NMNAT3Q96T66 252 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 DOK1Q99704 481 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 REG4Q9BYZ8 158 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 CSTL1Q9H114 145 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 ENOPH1Q9UHY7 261 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 KCNS2Q9ULS6 477 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 UGT2A1Q9Y4X1 527 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 CACNG2Q9Y698 323 aa4.89□□□□□ -1.63
VPS53-212ENST00000572259 SONP18583 2426 aaKnown RBP4.89□□□□□ -1.63
VPS53-212ENST00000572259 MALRD1Q5VYJ5 2156 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ZNF469Q96JG9 3925 aaPredicted RBP4.88□□□□□ -1.63
VPS53-212ENST00000572259 IGKV1D-43A0A0B4J1Z2 117 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 FCN1O00602 326 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 BHLHE40O14503 412 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 SURF4O15260 269 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 TGOLN2O43493 480 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ADRA2AP08913 450 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ZNF250P15622 560 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 M6PRP20645 277 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 FMO3P31513 532 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 FXYD6P3P58550 94 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 AESQ08117 197 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 GAGE5Q13069 117 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 GAGE6Q13070 117 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 UNC119Q13432 240 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ASAH1Q13510 395 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ENDOGQ14249 297 aaKnown RBP4.88□□□□□ -1.63
VPS53-212ENST00000572259 YIF1BQ5BJH7 314 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ZNF774Q6NX45 483 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ACOT7LQ6ZUV0 252 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 C9orf139Q6ZV77 190 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 MYPOPQ86VE0 399 aaPredicted RBP4.88□□□□□ -1.63
VPS53-212ENST00000572259 ZNF584Q8IVC4 421 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 OR6V1Q8N148 313 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 CCDC54Q8NEL0 328 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 OR5K1Q8NHB7 308 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ZNF502Q8TBZ5 544 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 DYNC2LI1Q8TCX1 351 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ZNRF4Q8WWF5 429 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 FLYWCH2Q96CP2 140 aaKnown RBP4.88□□□□□ -1.63
VPS53-212ENST00000572259 SEC22AQ96IW7 307 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 POM121L2Q96KW2 1035 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 PITX2Q99697 317 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 NKX3-1Q99801 234 aaPredicted RBP4.88□□□□□ -1.63
VPS53-212ENST00000572259 METTL9Q9H1A3 318 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 PLEKHA3Q9HB20 300 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 BATF3Q9NR55 127 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 SLC2A9Q9NRM0 540 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 VNN3Q9NY84 501 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 EHFQ9NZC4 300 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 TAAR3PQ9P1P4 343 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 OPN4Q9UHM6 478 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 AP4S1Q9Y587 144 aa4.88□□□□□ -1.63
VPS53-212ENST00000572259 ZFHX3Q15911 3703 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 CR1P17927 2039 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 JMJD1CQ15652 2540 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DYSFO75923 2080 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 IGLV3-9A0A075B6K5 115 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 IGLV1-36A0A0B4J1U3 117 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 A0A1B0GW55 424 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 G3V2T6 193 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 H7C2Y5 167 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 FGF16O43320 207 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 SOX14O95416 240 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 GCGP01275 180 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 IGHV3-13P01766 116 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 APOC1P02654 83 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 TCRBP04435 133 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4L2P0CJ85 424 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4L3P0CJ86 424 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4L4P0CJ87 422 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4L5P0CJ88 424 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4L6P0CJ89 424 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DUX4L7P0CJ90 424 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 DAOP14920 347 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 SELEP16581 610 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 USF1P22415 310 aaPredicted RBP4.87□□□□□ -1.63
VPS53-212ENST00000572259 CAV2P51636 162 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 SLC25A1P53007 311 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 RIPPLY3P57055 190 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 TMEM33P57088 247 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 PPP1CBP62140 327 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 ESRRGP62508 458 aa4.87□□□□□ -1.63
VPS53-212ENST00000572259 MRPS11P82912 194 aaKnown RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms