RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 JTBO76095 146 aa13.42□□□□□ -0.26
CLK3-221ENST00000568139 NAPSAO96009 420 aa13.42□□□□□ -0.26
CLK3-221ENST00000568139 MOGAT2Q3SYC2 334 aa13.42□□□□□ -0.26
CLK3-221ENST00000568139 SVOPQ8N4V2 548 aa13.42□□□□□ -0.26
CLK3-221ENST00000568139 OR9G4Q8NGQ1 327 aa13.42□□□□□ -0.26
CLK3-221ENST00000568139 PARP12Q9H0J9 701 aaKnown RBP13.42□□□□□ -0.26
CLK3-221ENST00000568139 FAM53CQ9NYF3 392 aa13.42□□□□□ -0.26
CLK3-221ENST00000568139 C13orf42A0A1B0GVH6 325 aa13.41□□□□□ -0.26
CLK3-221ENST00000568139 PROP1O75360 226 aa13.41□□□□□ -0.26
CLK3-221ENST00000568139 SPDEFO95238 335 aa13.41□□□□□ -0.26
CLK3-221ENST00000568139 C6orf201Q7Z4U5 140 aa13.41□□□□□ -0.26
CLK3-221ENST00000568139 POC5Q8NA72 575 aa13.41□□□□□ -0.26
CLK3-221ENST00000568139 TMEM80Q96HE8 168 aa13.41□□□□□ -0.26
CLK3-221ENST00000568139 ZNF355PQ9NSJ1 428 aa13.41□□□□□ -0.26
CLK3-221ENST00000568139 A0A0G2JLM5 398 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 ANKRD34BA5PLL1 514 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 CD1AP06126 327 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 UBBP0CG47 229 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 TAS2R43P59537 309 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 MED21Q13503 144 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 FXYD3Q14802 87 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 ZNF555Q8NEP9 628 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 TSNAXQ99598 290 aaKnown RBP13.4□□□□□ -0.26
CLK3-221ENST00000568139 TUBA4BQ9H853 241 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 SIGLEC8Q9NYZ4 499 aa13.4□□□□□ -0.26
CLK3-221ENST00000568139 PNMA8CA0A1B0GUJ8 204 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 BRI3O95415 125 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 IGKV1-16P04430 117 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 CPEP16870 476 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 HTR2CP28335 458 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 SYNJ2BPP57105 145 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 RPS16P62249 146 aaKnown RBP13.39□□□□□ -0.27
CLK3-221ENST00000568139 RPS27AP62979 156 aaKnown RBP13.39□□□□□ -0.27
CLK3-221ENST00000568139 OR10K2Q6IF99 312 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 LINC00322Q6ZN03 302 aaPredicted RBP13.39□□□□□ -0.27
CLK3-221ENST00000568139 MOB1BQ7L9L4 216 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 GTSCR1Q86UQ5 136 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 DRAXINQ8NBI3 349 aaPredicted RBP13.39□□□□□ -0.27
CLK3-221ENST00000568139 OR5T1Q8NG75 326 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 GRPEL2Q8TAA5 225 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 IL17DQ8TAD2 202 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 TMED9Q9BVK6 235 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 TM2D1Q9BX74 207 aa13.39□□□□□ -0.27
CLK3-221ENST00000568139 C11orf54Q9H0W9 315 aaPredicted RBP13.39□□□□□ -0.27
CLK3-221ENST00000568139 TRBV6-6A0A0A6YYG2 114 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 CSN3P07498 182 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 CEACAM6P40199 344 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 SSBP2P81877 361 aaPredicted RBP13.38□□□□□ -0.27
CLK3-221ENST00000568139 LCN12Q6JVE5 192 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 Q8N402 240 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 ZNF383Q8NA42 475 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 EDARADDQ8WWZ3 215 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 THRSPQ92748 146 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 GGHQ92820 318 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 PTX4Q96A99 478 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 TMEM59Q9BXS4 323 aa13.38□□□□□ -0.27
CLK3-221ENST00000568139 CHMP1AQ9HD42 196 aaPredicted RBP13.38□□□□□ -0.27
CLK3-221ENST00000568139 SMPD3Q9NY59 655 aaPredicted RBP13.38□□□□□ -0.27
CLK3-221ENST00000568139 DYNC1I1O14576 645 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 SLC25A17O43808 307 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 CELP19835 753 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 ZBTB25P24278 435 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 MAPK3P27361 379 aaPredicted RBP13.37□□□□□ -0.27
CLK3-221ENST00000568139 MECP2P51608 486 aaKnown RBP13.37□□□□□ -0.27
CLK3-221ENST00000568139 LINC00205P59089 165 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 C1orf100Q5SVJ3 147 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 ZNF343Q6P1L6 599 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 PDPNQ86YL7 162 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 C10orf67Q8IYJ2 551 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 SETD6Q8TBK2 473 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 TMEM68Q96MH6 324 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 NICN1Q9BSH3 213 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 HIPK2Q9H2X6 1198 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 RIMS4Q9H426 269 aaPredicted RBP13.37□□□□□ -0.27
CLK3-221ENST00000568139 RETNQ9HD89 108 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 OR1A1Q9P1Q5 309 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 PEF1Q9UBV8 284 aaKnown RBP13.37□□□□□ -0.27
CLK3-221ENST00000568139 ADAM30Q9UKF2 790 aa13.37□□□□□ -0.27
CLK3-221ENST00000568139 SHISA3A0PJX4 238 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 IZUMO1RA6ND01 250 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 EFCAB10A6NFE3 127 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 AADACP22760 399 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 ST3GAL4Q11206 333 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 UNC119Q13432 240 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 TATDN3Q17R31 274 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 PQLC1Q8N2U9 271 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 KCNG3Q8TAE7 436 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 TINAGL1Q9GZM7 467 aaPredicted RBP13.36□□□□□ -0.27
CLK3-221ENST00000568139 S100A14Q9HCY8 104 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 PLEKHJ1Q9NW61 149 aa13.36□□□□□ -0.27
CLK3-221ENST00000568139 CNIH1O95406 144 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 IGLV2-23P01705 113 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 TRBV12-3P01733 135 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 CRYGBP07316 175 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 HLA-DRB3P79483 266 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 QRFPP83859 136 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 PJVKQ0ZLH3 352 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 GLT8D1Q68CQ7 371 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 LRRTM1Q86UE6 522 aa13.35□□□□□ -0.27
CLK3-221ENST00000568139 OR2K2Q8NGT1 345 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms