RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 H7C2Y5 167 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 SLC17A2O00624 439 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 PROP1O75360 226 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 RBBP9O75884 186 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 SCTP09683 121 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 TMEM50BP56557 158 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 HLA-DRB3P79483 266 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 TPBGQ13641 420 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 P2RY14Q15391 338 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 CD200R1LQ6Q8B3 271 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 CASTOR1Q8WTX7 329 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 DLX4Q92988 240 aaPredicted RBP12.44□□□□□ -0.42
CLN3-229ENST00000567963 PTX4Q96A99 478 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 ASCL2Q99929 193 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 PLGRKTQ9HBL7 147 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 Q9N2K0 584 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 TPSG1Q9NRR2 321 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 AK6Q9Y3D8 172 aaKnown RBP12.44□□□□□ -0.42
CLN3-229ENST00000567963 SORL1Q92673 2214 aa12.44□□□□□ -0.42
CLN3-229ENST00000567963 LINC01619G3V211 115 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 HSPA12AO43301 675 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 LY86O95711 162 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 AKIRIN2Q53H80 203 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 ZNF562Q6V9R5 426 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 RNF150Q9ULK6 438 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 GAB2Q9UQC2 676 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 SMAD5-AS1Q9Y6J3 95 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 A3GALT2U3KPV4 340 aa12.43□□□□□ -0.42
CLN3-229ENST00000567963 LGALS1P09382 135 aaKnown RBP12.42□□□□□ -0.42
CLN3-229ENST00000567963 HSMCR30P0CW71 290 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 VEGFCP49767 419 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 SLURP1P55000 103 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 RPS25P62851 125 aaKnown RBP12.42□□□□□ -0.42
CLN3-229ENST00000567963 TRAM1Q15629 374 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 ACTBL2Q562R1 376 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 PYHIN1Q6K0P9 492 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 PPP1R27Q86WC6 154 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 DRAXINQ8NBI3 349 aaPredicted RBP12.42□□□□□ -0.42
CLN3-229ENST00000567963 ABHD5Q8WTS1 349 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 ARHGAP5-AS1Q96IT6 56 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 CLCC1Q96S66 551 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 FAM103A1Q9BTL3 118 aaKnown RBP12.42□□□□□ -0.42
CLN3-229ENST00000567963 PECRQ9BY49 303 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 DUSP21Q9H596 190 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 ISYNA1Q9NPH2 558 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 C12orf4Q9NQ89 552 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 METTL1Q9UBP6 276 aaKnown RBP12.42□□□□□ -0.42
CLN3-229ENST00000567963 TPRKBQ9Y3C4 175 aa12.42□□□□□ -0.42
CLN3-229ENST00000567963 IGHV4OR15-8A0A075B7B6 117 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 A0A087WW49 117 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 SAP30O75446 220 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 ARL6IP5O75915 188 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 IGKV1-16P04430 117 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 SNRPBP14678 240 aaKnown RBP12.41□□□□□ -0.42
CLN3-229ENST00000567963 LINC00205P59089 165 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 PSG5Q15238 335 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 RAB11BQ15907 218 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 UNQ5815/PRO19632Q6UWF5 114 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 LFNGQ8NES3 379 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 CMSS1Q9BQ75 279 aaKnown RBP12.41□□□□□ -0.42
CLN3-229ENST00000567963 VCX3BQ9H321 246 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 ZNF221Q9UK13 617 aa12.41□□□□□ -0.42
CLN3-229ENST00000567963 IGKV1-6A0A0C4DH72 117 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 CPEP16870 476 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 PSMA1P25786 263 aaKnown RBP12.4□□□□□ -0.42
CLN3-229ENST00000567963 AQP4P55087 323 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 CLDN12P56749 244 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 RPS16P62249 146 aaKnown RBP12.4□□□□□ -0.42
CLN3-229ENST00000567963 C2orf76Q3KRA6 126 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 PLAC9Q5JTB6 97 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 ACSM6Q6P461 480 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 ZNF383Q8NA42 475 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 FAM3DQ96BQ1 224 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 MS4A10Q96PG2 267 aa12.4□□□□□ -0.42
CLN3-229ENST00000567963 HUWE1Q7Z6Z7 4374 aaKnown RBP12.4□□□□□ -0.42
CLN3-229ENST00000567963 TRDCB7Z8K6 153 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 RGS10O43665 173 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 CA2P00918 260 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 HSPB1P04792 205 aaKnown RBP12.4□□□□□ -0.43
CLN3-229ENST00000567963 TFAP2AP05549 437 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 CALRP27797 417 aaKnown RBP12.4□□□□□ -0.43
CLN3-229ENST00000567963 CD40LGP29965 261 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 MLLT11Q13015 90 aaPredicted RBP12.4□□□□□ -0.43
CLN3-229ENST00000567963 OR56B1Q8NGI3 324 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 RHOVQ96L33 236 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 TSNAXQ99598 290 aaKnown RBP12.4□□□□□ -0.43
CLN3-229ENST00000567963 SLA2Q9H6Q3 261 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 RDH8Q9NYR8 311 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 V9GY05 133 aa12.4□□□□□ -0.43
CLN3-229ENST00000567963 LDLRAD4O15165 306 aa12.39□□□□□ -0.43
CLN3-229ENST00000567963 DENRO43583 198 aaKnown RBP12.39□□□□□ -0.43
CLN3-229ENST00000567963 SPDEFO95238 335 aa12.39□□□□□ -0.43
CLN3-229ENST00000567963 IGHV3-11P01762 117 aa12.39□□□□□ -0.43
CLN3-229ENST00000567963 SPNP16150 400 aa12.39□□□□□ -0.43
CLN3-229ENST00000567963 FABP5Q01469 135 aa12.39□□□□□ -0.43
CLN3-229ENST00000567963 PDPNQ86YL7 162 aa12.39□□□□□ -0.43
CLN3-229ENST00000567963 FLYWCH2Q96CP2 140 aaKnown RBP12.39□□□□□ -0.43
CLN3-229ENST00000567963 APOA2P02652 100 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 OR8U9P0C7N5 309 aa12.38□□□□□ -0.43
CLN3-229ENST00000567963 GP9P14770 177 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 559.1 ms