RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 NDUFA3O95167 84 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 IGHG4P01861 327 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 GSTP1P09211 210 aaKnown RBP14.71□□□□□ -0.05
CLN3-227ENST00000567495 CD36P16671 472 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 DTYMKP23919 212 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 SDC2P34741 201 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 PITPNAQ00169 270 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 NEDD8Q15843 81 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 TIMM50Q3ZCQ8 353 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 ZNF695Q8IW36 515 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 RCC1LQ96I51 464 aaKnown RBP14.71□□□□□ -0.05
CLN3-227ENST00000567495 HSPB9Q9BQS6 159 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 GAB2Q9UQC2 676 aa14.71□□□□□ -0.05
CLN3-227ENST00000567495 TRBV6-7A0A0A0MS04 114 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 SMIM30A4D0T7 59 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 NUDT19A8MXV4 375 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 H7C2Y5 167 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 BET1O15155 118 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 CDNFQ49AH0 187 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 OXLD1Q5BKU9 147 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 RITA1Q96K30 269 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 GPR61Q9BZJ8 451 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 OR51J1Q9H342 316 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 RNF150Q9ULK6 438 aa14.7□□□□□ -0.06
CLN3-227ENST00000567495 A0A087WXM4 84 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 LOC100506127A0A0U1RQW1 187 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 RRHO14718 337 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 TFAP2AP05549 437 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 GSTT2P0CG29 244 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 GSTT2BP0CG30 244 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 MYCNOSP40205 109 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 TAGLNQ01995 201 aaKnown RBP14.69□□□□□ -0.06
CLN3-227ENST00000567495 CFHR3Q02985 330 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 IGSF11Q5DX21 431 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 HACD4Q5VWC8 232 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 DCSTAMPQ9H295 470 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 ETV7Q9Y603 341 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 PLXNB1O43157 2135 aa14.69□□□□□ -0.06
CLN3-227ENST00000567495 TNFAIP8O95379 198 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 APOA2P02652 100 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 CTXN2P0C2S0 81 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 CDX1P47902 265 aaPredicted RBP14.68□□□□□ -0.06
CLN3-227ENST00000567495 THBS3P49746 956 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 ZNF660Q6AZW8 331 aaPredicted RBP14.68□□□□□ -0.06
CLN3-227ENST00000567495 PDPNQ86YL7 162 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 KLHL30-AS1Q8NEE0 82 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 TSNAXQ99598 290 aaKnown RBP14.68□□□□□ -0.06
CLN3-227ENST00000567495 GINS4Q9BRT9 223 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 NECAP2Q9NVZ3 263 aa14.68□□□□□ -0.06
CLN3-227ENST00000567495 ZNF230Q9UIE0 474 aaPredicted RBP14.68□□□□□ -0.06
CLN3-227ENST00000567495 IGHV7-81A0A0B4J1V7 117 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 M0R1X1 148 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 PROP1O75360 226 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 SPDEFO95238 335 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 OR8U9P0C7N5 309 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 SNRPBP14678 240 aaKnown RBP14.67□□□□□ -0.06
CLN3-227ENST00000567495 CNTFRP26992 372 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 PSMB8P28062 276 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 PLGLAQ15195 96 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 GLDNQ6ZMI3 551 aaPredicted RBP14.67□□□□□ -0.06
CLN3-227ENST00000567495 CROCCP3Q8IVE0 287 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 MRPL41Q8IXM3 137 aaKnown RBP14.67□□□□□ -0.06
CLN3-227ENST00000567495 LINC00482Q8N8I6 264 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 TSPAN14Q8NG11 270 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 OR8U1Q8NH10 309 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 LGALS14Q8TCE9 139 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 RBMXL1Q96E39 390 aaKnown RBP14.67□□□□□ -0.06
CLN3-227ENST00000567495 MCRIP2Q9BUT9 160 aaKnown RBP14.67□□□□□ -0.06
CLN3-227ENST00000567495 RHBDL2Q9NX52 303 aa14.67□□□□□ -0.06
CLN3-227ENST00000567495 A0A0A6YYH2 397 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 A6NJ64 397 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 ATP6V0E1O15342 81 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 RPLP1P05386 114 aaKnown RBP14.66□□□□□ -0.06
CLN3-227ENST00000567495 IGLL1P15814 213 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 MXD1Q05195 221 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 TMEM65Q6PI78 240 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 C8orf86Q6ZUL3 223 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 TCTEX1D1Q8N7M0 179 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 ZNF383Q8NA42 475 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 DRAXINQ8NBI3 349 aaPredicted RBP14.66□□□□□ -0.06
CLN3-227ENST00000567495 FLYWCH2Q96CP2 140 aaKnown RBP14.66□□□□□ -0.06
CLN3-227ENST00000567495 OR2D2Q9H210 308 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 PARP11Q9NR21 331 aa14.66□□□□□ -0.06
CLN3-227ENST00000567495 RBM7Q9Y580 266 aaKnown RBP14.66□□□□□ -0.06
CLN3-227ENST00000567495 TRAV41A0A0B4J266 112 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 CCL24O00175 119 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 PPIFP30405 207 aaKnown RBP14.65□□□□□ -0.06
CLN3-227ENST00000567495 LGALS7P47929 136 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 GNG2P59768 71 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 RPS16P62249 146 aaKnown RBP14.65□□□□□ -0.06
CLN3-227ENST00000567495 TMEM267Q0VDI3 215 aaPredicted RBP14.65□□□□□ -0.06
CLN3-227ENST00000567495 CBX3Q13185 183 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 IDNKQ5T6J7 187 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 ETV3LQ6ZN32 361 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 H1FOOQ8IZA3 346 aaPredicted RBP14.65□□□□□ -0.06
CLN3-227ENST00000567495 MAFIPQ8WZ33 124 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 ADTRPQ96IZ2 230 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 P2RX4Q99571 388 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 ST6GALNAC5Q9BVH7 336 aa14.65□□□□□ -0.06
CLN3-227ENST00000567495 FBXL15Q9H469 300 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms