RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 PTX4Q96A99 478 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 ZNF580Q9UK33 172 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 KCNK7Q9Y2U2 307 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 WASHC3Q9Y3C0 194 aa16.22■□□□□ 0.19
CLN3-219ENST00000565778 A0A075B6Q4 140 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 IGKV1-6A0A0C4DH72 117 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 METTL21EPA6NDL7 271 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 H0YJW9 148 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 NDUFA3O95167 84 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 PSMB8P28062 276 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 PSMB9P28065 219 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 PPIFP30405 207 aaKnown RBP16.21■□□□□ 0.19
CLN3-219ENST00000565778 UBE2UQ5VVX9 321 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 FBXL15Q9H469 300 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 RDH8Q9NYR8 311 aa16.21■□□□□ 0.19
CLN3-219ENST00000565778 TRAV41A0A0B4J266 112 aa16.2■□□□□ 0.18
CLN3-219ENST00000565778 RRHO14718 337 aa16.2■□□□□ 0.18
CLN3-219ENST00000565778 GNB3P16520 340 aa16.2■□□□□ 0.18
CLN3-219ENST00000565778 RAB6AP20340 208 aa16.2■□□□□ 0.18
CLN3-219ENST00000565778 OR5AN1Q8NGI8 311 aa16.2■□□□□ 0.18
CLN3-219ENST00000565778 OR4A4PQ8NGN8 299 aa16.2■□□□□ 0.18
CLN3-219ENST00000565778 YTHDF1Q9BYJ9 559 aaKnown RBP16.2■□□□□ 0.18
CLN3-219ENST00000565778 KLK15Q9H2R5 256 aa16.2■□□□□ 0.18
CLN3-219ENST00000565778 A0A0B4J203 849 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 SMIM30A4D0T7 59 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 K7EIL1 84 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 BET1O15155 118 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 FABP7O15540 132 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 PROP1O75360 226 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 RBBP9O75884 186 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 GSTT2P0CG29 244 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 GSTT2BP0CG30 244 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 TALDO1P37837 337 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 SERPINB10P48595 397 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 EGFEM1PQ0D2K5 195 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 ZNF660Q6AZW8 331 aaPredicted RBP16.19■□□□□ 0.18
CLN3-219ENST00000565778 OR5M8Q8NGP6 311 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 C4orf3Q8WVX3 66 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 CLCC1Q96S66 551 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 RNF5Q99942 180 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 ATG5Q9H1Y0 275 aa16.19■□□□□ 0.18
CLN3-219ENST00000565778 WI2-2373I1.2A0A1W2PRP0 233 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 RAB27BO00194 218 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 FCN1O00602 326 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 FCGR3AP08637 254 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 LINC00205P59089 165 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 RPS16P62249 146 aaKnown RBP16.18■□□□□ 0.18
CLN3-219ENST00000565778 CX3CL1P78423 397 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 ARFRP1Q13795 201 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 IGSF11Q5DX21 431 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 OR10J5Q8NHC4 309 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 ABHD5Q8WTS1 349 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 FCGR1BQ92637 280 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 UBE2E2Q96LR5 201 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 TXNL4BQ9NX01 149 aaKnown RBP16.18■□□□□ 0.18
CLN3-219ENST00000565778 ZNF230Q9UIE0 474 aaPredicted RBP16.18■□□□□ 0.18
CLN3-219ENST00000565778 SSR3Q9UNL2 185 aa16.18■□□□□ 0.18
CLN3-219ENST00000565778 IGLV1-40P01703 118 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 TFAP2AP05549 437 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 OR8U9P0C7N5 309 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 HIST1H1DP16402 221 aaKnown RBP16.17■□□□□ 0.18
CLN3-219ENST00000565778 RAB9AP51151 201 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 NR2C2APQ86WQ0 139 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 ZNF491Q8N8L2 437 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 OR11H1Q8NG94 326 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 MAFIPQ8WZ33 124 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 METTL1Q9UBP6 276 aaKnown RBP16.17■□□□□ 0.18
CLN3-219ENST00000565778 ZMAT5Q9UDW3 170 aaKnown RBP16.17■□□□□ 0.18
CLN3-219ENST00000565778 VSIG4Q9Y279 399 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 A3GALT2U3KPV4 340 aa16.17■□□□□ 0.18
CLN3-219ENST00000565778 M0R1X1 148 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 MFNGO00587 321 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 APOA2P02652 100 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 FGF9P31371 208 aaPredicted RBP16.16■□□□□ 0.18
CLN3-219ENST00000565778 TMEM267Q0VDI3 215 aaPredicted RBP16.16■□□□□ 0.18
CLN3-219ENST00000565778 PSG5Q15238 335 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 ECSCRQ19T08 205 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 ZNF383Q8NA42 475 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 MINDY2Q8NBR6 621 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 OR5B12Q96R08 314 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 TSNAXQ99598 290 aaKnown RBP16.16■□□□□ 0.18
CLN3-219ENST00000565778 STUB1Q9UNE7 303 aa16.16■□□□□ 0.18
CLN3-219ENST00000565778 RBM7Q9Y580 266 aaKnown RBP16.16■□□□□ 0.18
CLN3-219ENST00000565778 A0A1W2PN81 502 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 NOTOA8MTQ0 251 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 IGKV1-16P04430 117 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 CHRNA7P36544 502 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 KIAA0141Q14154 515 aaPredicted RBP16.15■□□□□ 0.18
CLN3-219ENST00000565778 ARL6IP1Q15041 203 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 CDNFQ49AH0 187 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 TPRA1Q86W33 373 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.15■□□□□ 0.18
CLN3-219ENST00000565778 OR1N2Q8NGR9 330 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 MYOZ3Q8TDC0 251 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 FLYWCH2Q96CP2 140 aaKnown RBP16.15■□□□□ 0.18
CLN3-219ENST00000565778 GINS4Q9BRT9 223 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 TOLLIPQ9H0E2 274 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 GNB4Q9HAV0 340 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 FBXO7Q9Y3I1 522 aa16.15■□□□□ 0.18
CLN3-219ENST00000565778 NUBP2Q9Y5Y2 271 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms