RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GAB2Q9UQC2 676 aa10.59□□□□□ -0.71
CLK3-213ENST00000563842 WASHC3Q9Y3C0 194 aa10.59□□□□□ -0.71
CLK3-213ENST00000563842 TMEM235A6NFC5 223 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 H0YJW9 148 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 APOA2P02652 100 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 TFAP2AP05549 437 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 OR5H8P0DN80 308 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 LSM3P62310 102 aaKnown RBP10.58□□□□□ -0.72
CLK3-213ENST00000563842 TAGLNQ01995 201 aaKnown RBP10.58□□□□□ -0.72
CLK3-213ENST00000563842 KHDC1LQ5JSQ8 128 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 FAM131AQ6UXB0 335 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 NPBQ8NG41 125 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 OR5AN1Q8NGI8 311 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 OR5H6Q8NGV6 325 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 MAFIPQ8WZ33 124 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 KCTD12Q96CX2 325 aaKnown RBP10.58□□□□□ -0.72
CLK3-213ENST00000563842 S100A16Q96FQ6 103 aaKnown RBP10.58□□□□□ -0.72
CLK3-213ENST00000563842 NOL4LQ96MY1 436 aaPredicted RBP10.58□□□□□ -0.72
CLK3-213ENST00000563842 ST6GALNAC5Q9BVH7 336 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 FUNDC2Q9BWH2 189 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 ZFP57Q9NU63 452 aa10.58□□□□□ -0.72
CLK3-213ENST00000563842 ZNF107Q9UII5 783 aaPredicted RBP10.58□□□□□ -0.72
CLK3-213ENST00000563842 NOTCH3Q9UM47 2321 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 TRAV18A0A075B6X5 111 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 NDUFA3O95167 84 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 OR8U9P0C7N5 309 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 PF4V1P10720 104 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 SLC6A1P30531 599 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 RPS19P39019 145 aaKnown RBP10.57□□□□□ -0.72
CLK3-213ENST00000563842 CBX3Q13185 183 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 C5orf64Q2M2E5 130 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 LIN54Q6MZP7 749 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 TEX38Q6PEX7 206 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 CNIH2Q6PI25 160 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 PDPNQ86YL7 162 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 OR13F1Q8NGS4 319 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 OR8U1Q8NH10 309 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 NUDCD2Q8WVJ2 157 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 SLC25A38Q96DW6 304 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 OR2D2Q9H210 308 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 ZNF580Q9UK33 172 aa10.57□□□□□ -0.72
CLK3-213ENST00000563842 ELF5Q9UKW6 265 aaPredicted RBP10.57□□□□□ -0.72
CLK3-213ENST00000563842 A0A1W2PRX2 142 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 ADARB2-AS1A8MUL3 147 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 M0R1X1 148 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 SLC22A5O76082 557 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 HLA-DRB1P01911 266 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 IGF1P05019 195 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 VDAC1P21796 283 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 CBX5P45973 191 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 PLGLAQ15195 96 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 TCTEX1D4Q5JR98 221 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 UBE2NLQ5JXB2 153 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 HIST2H2BDQ6DRA6 164 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 GLDNQ6ZMI3 551 aaPredicted RBP10.56□□□□□ -0.72
CLK3-213ENST00000563842 ZNF329Q86UD4 541 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 H1FOOQ8IZA3 346 aaPredicted RBP10.56□□□□□ -0.72
CLK3-213ENST00000563842 SLC25A46Q96AG3 418 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 ADTRPQ96IZ2 230 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 TSNAXQ99598 290 aaKnown RBP10.56□□□□□ -0.72
CLK3-213ENST00000563842 MRPS26Q9BYN8 205 aaKnown RBP10.56□□□□□ -0.72
CLK3-213ENST00000563842 LINC00527Q9UJ94 153 aa10.56□□□□□ -0.72
CLK3-213ENST00000563842 CMYA5Q8N3K9 4069 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 LINC01548A6NM66 108 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 RRHO14718 337 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 XRCC3O43542 346 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 SPDEFO95238 335 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 PF4P02776 101 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 RRASP10301 218 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 TGFBR1P36897 503 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 THBS3P49746 956 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 LUMP51884 338 aaPredicted RBP10.55□□□□□ -0.72
CLK3-213ENST00000563842 RPS16P62249 146 aaKnown RBP10.55□□□□□ -0.72
CLK3-213ENST00000563842 CXorf66Q5JRM2 361 aaPredicted RBP10.55□□□□□ -0.72
CLK3-213ENST00000563842 C10orf99Q6UWK7 81 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 DRAXINQ8NBI3 349 aaPredicted RBP10.55□□□□□ -0.72
CLK3-213ENST00000563842 FLYWCH2Q96CP2 140 aaKnown RBP10.55□□□□□ -0.72
CLK3-213ENST00000563842 HSPB9Q9BQS6 159 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 SLC35D1Q9NTN3 355 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 SDHAF2Q9NX18 166 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 ANXA10Q9UJ72 324 aa10.55□□□□□ -0.72
CLK3-213ENST00000563842 IGKV1D-8A0A087WSZ0 117 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 SSX5O60225 188 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 PROP1O75360 226 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 ELANEP08246 267 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 CNTFRP26992 372 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 LGALS7P47929 136 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 ARPC4P59998 168 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 VBP1P61758 197 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 RPL23AP62750 156 aaKnown RBP10.54□□□□□ -0.72
CLK3-213ENST00000563842 FOXE3Q13461 319 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 RTL8BQ17RB0 113 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 ZNF660Q6AZW8 331 aaPredicted RBP10.54□□□□□ -0.72
CLK3-213ENST00000563842 ANKRD13BQ86YJ7 626 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 SAMD12Q8N8I0 201 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 ZNF383Q8NA42 475 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 BEST4Q8NFU0 473 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 ACOT12Q8WYK0 555 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 RITA1Q96K30 269 aa10.54□□□□□ -0.72
CLK3-213ENST00000563842 CMTM3Q96MX0 182 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms