RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 KCTD21Q4G0X4 260 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 CXorf66Q5JRM2 361 aaPredicted RBP12.29□□□□□ -0.44
VPS39-203ENST00000561797 LIN54Q6MZP7 749 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 ETV3LQ6ZN32 361 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 NPBQ8NG41 125 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 KCTD7Q96MP8 289 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 WASHC3Q9Y3C0 194 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 WSB1Q9Y6I7 421 aa12.29□□□□□ -0.44
VPS39-203ENST00000561797 OR5H14A6NHG9 310 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 ATP6V0E1O15342 81 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 NDUFA3O95167 84 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 HLA-DRB1P01911 266 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 IGF1P05019 195 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 CD36P16671 472 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 SERPINB10P48595 397 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 THBS3P49746 956 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 FOXE3Q13461 319 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 PLGLAQ15195 96 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 CDNFQ49AH0 187 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 FOXB2Q5VYV0 432 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 SFXN4Q6P4A7 337 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 ZNF695Q8IW36 515 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 MRPL41Q8IXM3 137 aaKnown RBP12.28□□□□□ -0.44
VPS39-203ENST00000561797 LINC00482Q8N8I6 264 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 OR10J5Q8NHC4 309 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 DUX3Q96PT4 197 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 OR51J1Q9H342 316 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 FBXL15Q9H469 300 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 PARP11Q9NR21 331 aa12.28□□□□□ -0.44
VPS39-203ENST00000561797 IGHV7-81A0A0B4J1V7 117 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 G3V318 75 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 M0R1X1 148 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 RRHO14718 337 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 TFAP2AP05549 437 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 ELANEP08246 267 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 OR8U9P0C7N5 309 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 CFHR3Q02985 330 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 OR5AN1Q8NGI8 311 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 OR8U1Q8NH10 309 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 LGALS14Q8TCE9 139 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 CABLES2Q9BTV7 478 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 CENPOQ9BU64 300 aa12.27□□□□□ -0.45
VPS39-203ENST00000561797 IGKV1D-8A0A087WSZ0 117 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 TRBV6-7A0A0A0MS04 114 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 IGHG4P01861 327 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 OR5H8P0DN80 308 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 SLC6A1P30531 599 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 MYCNOSP40205 109 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 ARL6IP1Q15041 203 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 IDNKQ5T6J7 187 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 ZNF383Q8NA42 475 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 RCC1LQ96I51 464 aaKnown RBP12.26□□□□□ -0.45
VPS39-203ENST00000561797 CLCC1Q96S66 551 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 GINS4Q9BRT9 223 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 ST6GALNAC5Q9BVH7 336 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 TOLLIPQ9H0E2 274 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 OR2D2Q9H210 308 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 NECAP2Q9NVZ3 263 aa12.26□□□□□ -0.45
VPS39-203ENST00000561797 RBM7Q9Y580 266 aaKnown RBP12.26□□□□□ -0.45
VPS39-203ENST00000561797 TRAV41A0A0B4J266 112 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 TMEM235A6NFC5 223 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 FCN1O00602 326 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 RBBP9O75884 186 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 APOA2P02652 100 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 CDX1P47902 265 aaPredicted RBP12.25□□□□□ -0.45
VPS39-203ENST00000561797 RAB25P57735 213 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 RPS16P62249 146 aaKnown RBP12.25□□□□□ -0.45
VPS39-203ENST00000561797 DEFB136Q30KP8 78 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.25□□□□□ -0.45
VPS39-203ENST00000561797 OR5H6Q8NGV6 325 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 ABHD5Q8WTS1 349 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 RAX2Q96IS3 184 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.25□□□□□ -0.45
VPS39-203ENST00000561797 AURKAIP1Q9NWT8 199 aaPredicted RBP12.25□□□□□ -0.45
VPS39-203ENST00000561797 METTL1Q9UBP6 276 aaKnown RBP12.25□□□□□ -0.45
VPS39-203ENST00000561797 ZNF580Q9UK33 172 aa12.25□□□□□ -0.45
VPS39-203ENST00000561797 J3QRK9 145 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 CCL24O00175 119 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 IGKV1-16P04430 117 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 PSMB8P28062 276 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 PPIFP30405 207 aaKnown RBP12.24□□□□□ -0.45
VPS39-203ENST00000561797 CX3CL1P78423 397 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 PSG5Q15238 335 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 SRSF7Q16629 238 aaKnown RBP eCLIP12.24□□□□□ -0.45
VPS39-203ENST00000561797 ECSCRQ19T08 205 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 HACD4Q5VWC8 232 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 TMEM65Q6PI78 240 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 Q6ZS49 121 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 REC114Q7Z4M0 266 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 RNF152Q8N8N0 203 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 MRAPQ8TCY5 172 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 NUDCD2Q8WVJ2 157 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 P2RX4Q99571 388 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 RNF5Q99942 180 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 KLK15Q9H2R5 256 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 SLC35D1Q9NTN3 355 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 SDHAF2Q9NX18 166 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 RHBDL2Q9NX52 303 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 FBXO7Q9Y3I1 522 aa12.24□□□□□ -0.45
VPS39-203ENST00000561797 A3GALT2U3KPV4 340 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms