RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CD40LGP29965 261 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 HLA-DRB3P79483 266 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 QRFPP83859 136 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 AKIRIN2Q53H80 203 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 ACTBL2Q562R1 376 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 LIPKQ5VXJ0 399 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 CD200R1LQ6Q8B3 271 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 UNQ5815/PRO19632Q6UWF5 114 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 OR5AN1Q8NGI8 311 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 UFD1Q92890 307 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 CLCC1Q96S66 551 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 RNF5Q99942 180 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 AGMATQ9BSE5 352 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 HDHD3Q9BSH5 251 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 FAM103A1Q9BTL3 118 aaKnown RBP8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 C11orf54Q9H0W9 315 aaPredicted RBP8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 LPAR5Q9H1C0 372 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 PLGRKTQ9HBL7 147 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 SCN3BQ9NY72 215 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 OR1A1Q9P1Q5 309 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 METTL1Q9UBP6 276 aaKnown RBP8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 MGAT4AQ9UM21 535 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 LSM2Q9Y333 95 aaKnown RBP8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 STAB2Q8WWQ8 2551 aa8.56□□□□□ -1.04
CCDC88C-213ENST00000557455 IGHV4OR15-8A0A075B7B6 117 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 A0A087WW49 117 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 IGHV3-11P01762 117 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 HSPB1P04792 205 aaKnown RBP8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 SCTP09683 121 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 OR8U9P0C7N5 309 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 EGR2P11161 476 aaPredicted RBP8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 GP9P14770 177 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 SPNP16150 400 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 CPEP16870 476 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 TPPP2P59282 170 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 PSG5Q15238 335 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 P2RY14Q15391 338 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 ACSM6Q6P461 480 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 ZNF562Q6V9R5 426 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 FAM89BQ8N5H3 189 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 DRAXINQ8NBI3 349 aaPredicted RBP8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 LFNGQ8NES3 379 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 OR6Q1Q8NGQ2 317 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 TMEM203Q969S6 136 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 FLYWCH2Q96CP2 140 aaKnown RBP8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 MS4A10Q96PG2 267 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 TSNAXQ99598 290 aaKnown RBP8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 VCX3BQ9H321 246 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 TPSG1Q9NRR2 321 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 NKX1-2Q9UD57 310 aaPredicted RBP8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 ZNF221Q9UK13 617 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 GAB2Q9UQC2 676 aa8.55□□□□□ -1.04
CCDC88C-213ENST00000557455 SLC17A2O00624 439 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 SPDEFO95238 335 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 CA2P00918 260 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 TFAP2AP05549 437 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 VEGFCP49767 419 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 RPS16P62249 146 aaKnown RBP8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 PITPNAQ00169 270 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 OVCH2Q7RTZ1 564 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 SBSPONQ8IVN8 264 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 ARPC1AQ92747 370 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 PTX4Q96A99 478 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 ARHGAP5-AS1Q96IT6 56 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 RCHY1Q96PM5 261 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 OR4C12Q96R67 309 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 CMSS1Q9BQ75 279 aaKnown RBP8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 SLA2Q9H6Q3 261 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 Q9N2K0 584 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 C12orf4Q9NQ89 552 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 HSF4Q9ULV5 492 aa8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 AK6Q9Y3D8 172 aaKnown RBP8.54□□□□□ -1.04
CCDC88C-213ENST00000557455 FOXI3A8MTJ6 420 aaPredicted RBP8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 ARPC1BO15143 372 aaKnown RBP8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 PROP1O75360 226 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 ARL6IP5O75915 188 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 APOA2P02652 100 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 TRGV3P03979 118 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 IGKV1-16P04430 117 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 FRMD6-AS1P0C7T7 363 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 HSMCR30P0CW71 290 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 TMEM50BP56557 158 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 IRF3Q14653 427 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 TRAM1Q15629 374 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 RAB11BQ15907 218 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 PDPNQ86YL7 162 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 ZNF383Q8NA42 475 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 RHOVQ96L33 236 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 GFI1Q99684 422 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 ELOVL1Q9BW60 279 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 PECRQ9BY49 303 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 ZNF355PQ9NSJ1 428 aa8.53□□□□□ -1.04
CCDC88C-213ENST00000557455 TRIM64CA6NLI5 447 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 M0R1X1 148 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 SLC25A17O43808 307 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 CNIH1O95406 144 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 SNRPBP14678 240 aaKnown RBP8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 PSMA1P25786 263 aaKnown RBP8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 RANBP1P43487 201 aa8.52□□□□□ -1.05
CCDC88C-213ENST00000557455 CLDN12P56749 244 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 261 ms