RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 DNAJC9-AS1A6NH13 148 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 OOSP1A8MZH6 123 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 H3BUX3 64 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 VENTXO95231 258 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 AMY2AP04746 511 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 AKAIN1P0CW23 69 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 PPP5CP53041 499 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 TSPAN5P62079 268 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 BAMBIQ13145 260 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 SCGB2A2Q13296 93 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 ZNF846Q147U1 533 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 SLC9A3R2Q15599 337 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 LRRC75BQ2VPJ9 315 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 CCBE1Q6UXH8 406 aaPredicted RBP10.3□□□□□ -0.76
SHMT2-227ENST00000557269 MOB3BQ86TA1 216 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 LHFPL1Q86WI0 220 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 TMEM17Q86X19 198 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 TGIF2LXQ8IUE1 241 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 TOMM5Q8N4H5 51 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 SECTM1Q8WVN6 248 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 NABP2Q9BQ15 211 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 SLC5A7Q9GZV3 580 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 HRASLSQ9HDD0 168 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 GAB2Q9UQC2 676 aa10.3□□□□□ -0.76
SHMT2-227ENST00000557269 FAM90A9PA6NNJ1 464 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 M0R1X1 148 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 IFNA6P05013 189 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 GNRHRP30968 328 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 DYNLT3P51808 116 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 HILS1P60008 231 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 HERV-K104P61576 105 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 EIF4EBP1Q13541 118 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-227ENST00000557269 HABP2Q14520 560 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-227ENST00000557269 MEF2DQ14814 521 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 LY6EQ16553 131 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 TRIQKQ629K1 86 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 ZNF57Q68EA5 555 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-227ENST00000557269 RBMS3Q6XE24 437 aaKnown RBP10.29□□□□□ -0.76
SHMT2-227ENST00000557269 PRIMA1Q86XR5 153 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 OR8H3Q8N146 312 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 ARRDC1Q8N5I2 433 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 ZNF645Q8N7E2 425 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 ZNF383Q8NA42 475 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 OR51S1Q8NGJ8 323 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 ZNF418Q8TF45 676 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-227ENST00000557269 S1PR3Q99500 378 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 GHITMQ9H3K2 345 aa10.29□□□□□ -0.76
SHMT2-227ENST00000557269 NIPBLQ6KC79 2804 aaeCLIP10.28□□□□□ -0.76
SHMT2-227ENST00000557269 PLA2G10O15496 165 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 TNFSF12O43508 249 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 SNRNP70P08621 437 aaKnown RBP10.28□□□□□ -0.76
SHMT2-227ENST00000557269 CD40LGP29965 261 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 RPL30P62888 115 aaKnown RBP10.28□□□□□ -0.76
SHMT2-227ENST00000557269 IFITM3Q01628 133 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 AANATQ16613 207 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 SCGB2B2Q4G0G5 96 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 CCDC144NLQ6NUI1 221 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 FAM71F2Q6NXP2 309 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 ZNF818PQ6ZRF7 136 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.28□□□□□ -0.76
SHMT2-227ENST00000557269 OR13C8Q8NGS7 320 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 TERB2Q8NHR7 220 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 FAM216AQ8WUB2 273 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 SSMEM1Q8WWF3 244 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 CAPSLQ8WWF8 208 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 RITA1Q96K30 269 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 CCDC32Q9BV29 185 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 CHIAQ9BZP6 476 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 WDR12Q9GZL7 423 aaKnown RBP10.28□□□□□ -0.76
SHMT2-227ENST00000557269 MCUBQ9NWR8 336 aa10.28□□□□□ -0.76
SHMT2-227ENST00000557269 A6NDX4 124 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 LINC00473A8K010 186 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 DISC1C4P0D8 188 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 H0YJW9 148 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 TXNL1O43396 289 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 TCF21O43680 179 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 CHST1O43916 411 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 BRS3P32247 399 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 DUTP33316 252 aaKnown RBP10.27□□□□□ -0.77
SHMT2-227ENST00000557269 AP3S2P59780 193 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 TMEM219Q86XT9 240 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 OR5AN1Q8NGI8 311 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 MARCH1Q8TCQ1 289 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 TAF15Q92804 592 aaKnown RBP eCLIP10.27□□□□□ -0.77
SHMT2-227ENST00000557269 RSRP1Q9BUV0 290 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 DPAGT1Q9H3H5 408 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 ABCB10Q9NRK6 738 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 TCF19Q9Y242 345 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 NF1P21359 2839 aa10.27□□□□□ -0.77
SHMT2-227ENST00000557269 IGKV1D-33P01593 117 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 IGKV1-33P01594 117 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 PI3P19957 117 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 CD1BP29016 333 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 BTCP35070 178 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 INPP1P49441 399 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 UCP3P55916 312 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 BRWD1-AS2P59051 145 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 UBA52P62987 128 aaKnown RBP10.26□□□□□ -0.77
SHMT2-227ENST00000557269 HNF4GQ14541 408 aa10.26□□□□□ -0.77
SHMT2-227ENST00000557269 PHLDA2Q53GA4 152 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms