RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 DIABLOQ9NR28 239 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 SPATA2Q9UM82 520 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 GAB2Q9UQC2 676 aa16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 RBM7Q9Y580 266 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-210ENST00000555995 H0YJW9 148 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 H7C2Y5 167 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 NDUFA3O95167 84 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 TFAP2AP05549 437 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 CT45A6P0DMU7 189 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 CT45A5P0DMU8 189 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 CT45A7P0DMV0 189 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 TAGLNQ01995 201 aaKnown RBP16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 IGSF11Q5DX21 431 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 TEX38Q6PEX7 206 aa16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 NOL4LQ96MY1 436 aaPredicted RBP16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 ZNF230Q9UIE0 474 aaPredicted RBP16.29■□□□□ 0.2
CCDC88C-210ENST00000555995 A0A1W2PRX2 142 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 TMEM235A6NFC5 223 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 PF4P02776 101 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 IGF1P05019 195 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 CBX3Q13185 183 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 C5orf64Q2M2E5 130 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 ZNF260Q3ZCT1 412 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 TCTEX1D4Q5JR98 221 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 PDPNQ86YL7 162 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 MAFIPQ8WZ33 124 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 OR2D2Q9H210 308 aa16.28■□□□□ 0.2
CCDC88C-210ENST00000555995 SPDEFO95238 335 aa16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 PLGLAQ15195 96 aa16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 HIST2H2BDQ6DRA6 164 aa16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 ZNF329Q86UD4 541 aa16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 KCTD12Q96CX2 325 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 SLC25A38Q96DW6 304 aa16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 TSNAXQ99598 290 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 RNF150Q9ULK6 438 aa16.27■□□□□ 0.2
CCDC88C-210ENST00000555995 PLXNB1O43157 2135 aa16.27■□□□□ 0.19
CCDC88C-210ENST00000555995 M0R1X1 148 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 SLC22A5O76082 557 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 ELANEP08246 267 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 OR8U9P0C7N5 309 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 RPL23AP62750 156 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 FOXE3Q13461 319 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 CXorf66Q5JRM2 361 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 LIN54Q6MZP7 749 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 CNIH2Q6PI25 160 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 C10orf99Q6UWK7 81 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 H1FOOQ8IZA3 346 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 OR5H6Q8NGV6 325 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 OR8U1Q8NH10 309 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 NUDCD2Q8WVJ2 157 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 ADTRPQ96IZ2 230 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 HSPB9Q9BQS6 159 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 ST6GALNAC5Q9BVH7 336 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 LINC00527Q9UJ94 153 aa16.26■□□□□ 0.19
CCDC88C-210ENST00000555995 RRHO14718 337 aa16.25■□□□□ 0.19
CCDC88C-210ENST00000555995 CBX5P45973 191 aa16.25■□□□□ 0.19
CCDC88C-210ENST00000555995 GLDNQ6ZMI3 551 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-210ENST00000555995 OR51J1Q9H342 316 aa16.25■□□□□ 0.19
CCDC88C-210ENST00000555995 TRAV18A0A075B6X5 111 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 RRASP10301 218 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 CD33P20138 364 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 THBS3P49746 956 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 LSM3P62310 102 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 DEFA6Q01524 100 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 UBE2NLQ5JXB2 153 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 OR13F1Q8NGS4 319 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 S100A16Q96FQ6 103 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 FUNDC2Q9BWH2 189 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 SLC35D1Q9NTN3 355 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 ANXA10Q9UJ72 324 aa16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 ELF5Q9UKW6 265 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-210ENST00000555995 LINC01548A6NM66 108 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 NUDT19A8MXV4 375 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 IGHG4P01861 327 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 CNTFRP26992 372 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 RPS19P39019 145 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 LUMP51884 338 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 ARPC4P59998 168 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 RTL8BQ17RB0 113 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 ZNF660Q6AZW8 331 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 TCTEX1D1Q8N7M0 179 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 RNF152Q8N8N0 203 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 ZNF383Q8NA42 475 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 SLC25A46Q96AG3 418 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 FLYWCH2Q96CP2 140 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 PARP11Q9NR21 331 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 SDHAF2Q9NX18 166 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 MEGF8Q7Z7M0 2845 aa16.23■□□□□ 0.19
CCDC88C-210ENST00000555995 IGKV1D-8A0A087WSZ0 117 aa16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 IGHV7-81A0A0B4J1V7 117 aa16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 PROP1O75360 226 aa16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 DUS4LO95620 317 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 LGALS7P47929 136 aa16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 RPS16P62249 146 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 DRAXINQ8NBI3 349 aaPredicted RBP16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 MRPS26Q9BYN8 205 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 GPR61Q9BZJ8 451 aa16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 FBXL15Q9H469 300 aa16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 OR2W1Q9Y3N9 320 aa16.22■□□□□ 0.19
CCDC88C-210ENST00000555995 ATP6V0E1O15342 81 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms