RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-222	ENST00000555774	SMIM21	Q3B7S5	101 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	NCMAP	Q5T1S8	102 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	OR8G2P	Q6IF36	304 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	FAM210B	Q96KR6	192 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	HSD17B10	Q99714	261 aa	Known RBP	11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	MANBAL	Q9NQG1	85 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	DOK5	Q9P104	306 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	NAT8	Q9UHE5	227 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	URGCP-MRPS24	S4R325	110 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	TECTA	O75443	2155 aa		11.31	□□□□□ -0.6
SHMT2-222	ENST00000555774	TRBV24-1	A0A075B6N3	115 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	PMS2P5	A8MQ11	134 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	SEC14L6	B5MCN3	397 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	TMEM250	H0YL14	139 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	AQP7	O14520	342 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	S1PR2	O95136	353 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	KRAS	P01116	189 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	GABRA2	P47869	451 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	AES	Q08117	197 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	ZNF816	Q0VGE8	651 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	WDR25	Q64LD2	544 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	WDR82	Q6UXN9	313 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	OR10P1	Q8NGE3	313 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	DTD1	Q8TEA8	209 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	WASF3	Q9UPY6	502 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774		A0A1B0GWJ7	208 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	ADH4	P08319	380 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	NDUFA6	P56556	154 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	MEF2B	Q02080	365 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	CYP2G1P	Q6ZSU1	146 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	GCNT2	Q8N0V5	402 aa		11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	ZNF808	Q8N4W9	903 aa	Predicted RBP	11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	RPP25L	Q8N5L8	163 aa	Known RBP	11.3	□□□□□ -0.6
SHMT2-222	ENST00000555774	CFAP54	Q96N23	3096 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	WNT9B	O14905	357 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	TIMM8A	O60220	97 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	SOX15	O60248	233 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BK	O60814	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BJ	P06899	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BO	P23527	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	S100A2	P29034	98 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BB	P33778	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	PSMB3	P49720	205 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BD	P58876	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BC	P62807	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HTD2	P86397	168 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	PMP22	Q01453	160 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST2H2BE	Q16778	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	MBNL2	Q5VZF2	373 aa	Known RBP	11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	TMPRSS7	Q7RTY8	843 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	H2BFWT	Q7Z2G1	175 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	MRGPRD	Q8TDS7	321 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BH	Q93079	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BN	Q99877	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	HIST1H2BM	Q99879	126 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	ACTR3C	Q9C0K3	210 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	FAM90A9P	A6NNJ1	464 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	C17orf98	A8MV24	154 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	KBTBD11	O94819	623 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	IGKV1D-33	P01593	117 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	IGKV1-33	P01594	117 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	FGF7	P21781	194 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	KIR2DL2	P43627	348 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	GNB2	P62879	340 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	NKX6-1	P78426	367 aa	Predicted RBP	11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	ZNF718	Q3SXZ3	478 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	ACSM6	Q6P461	480 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	ZNF826P	Q6ZT77	177 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	GAR1	Q9NY12	217 aa	Known RBP	11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	CLN8	Q9UBY8	286 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	MIOX	Q9UGB7	285 aa		11.29	□□□□□ -0.6
SHMT2-222	ENST00000555774	ZNF407	Q9C0G0	2248 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	IGHV3-64D	A0A0J9YX35	117 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	C17orf112	F2Z3M2	114 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	SPINT2	O43291	252 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	YIF1A	O95070	293 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	IGLV1-44	P01699	117 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	GCH1	P30793	250 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	BRWD1-AS2	P59051	145 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	CD81	P60033	236 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	COL10A1	Q03692	680 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	IGFL2	Q6UWQ7	119 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	CNEP1R1	Q8N9A8	125 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	EDARADD	Q8WWZ3	215 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	SARAF	Q96BY9	339 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	GGACT	Q9BVM4	153 aa		11.28	□□□□□ -0.6
SHMT2-222	ENST00000555774	PRR33	A8MZF0	331 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	LINC00587	B1AMM8	73 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	TRGC2	P03986	189 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	MDK	P21741	143 aa	Predicted RBP	11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	TMEM241	Q24JQ0	296 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	AARD	Q4LEZ3	155 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	OR2B11	Q5JQS5	317 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	PRAMEF6	Q5VXH4	476 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	NCR3LG1	Q68D85	454 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	CXorf67	Q86X51	503 aa	Predicted RBP	11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	FAM90A1	Q86YD7	464 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	FAM169B	Q8N8A8	192 aa		11.27	□□□□□ -0.6
SHMT2-222	ENST00000555774	ZNF709	Q8N972	641 aa		11.27	□□□□□ -0.6

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