RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 H0YJW9 148 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 AP4M1O00189 453 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 NBR2O15453 112 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 TPPPO94811 219 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 SPDEFO95238 335 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 IGHG2P01859 326 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 OR5H8P0DN80 308 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 ZNF182P17025 639 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 ACTBP60709 375 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 SLC35B1P78383 322 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 RPL39P5Q59GN2 51 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 FAM131AQ6UXB0 335 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 HOGA1Q86XE5 327 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 NDUFA11Q86Y39 141 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 FAM71E2Q8N5Q1 922 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 Q8N9W7 124 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 BEST4Q8NFU0 473 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 WIPF2Q8TF74 440 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 C15orf40Q8WUR7 153 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 MAFIPQ8WZ33 124 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 ABHD14BQ96IU4 210 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 PARP12Q9H0J9 701 aaKnown RBP11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 IFT46Q9NQC8 304 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 TENM1Q9UKZ4 2725 aa11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 TET2Q6N021 2002 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-207ENST00000554051 SSX5O60225 188 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 CSF1P09603 554 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 CT45A6P0DMU7 189 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 CT45A5P0DMU8 189 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 CT45A7P0DMV0 189 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 RRASP10301 218 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 THBS3P49746 956 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 LUMP51884 338 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 TAS2R20P59543 309 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 MSMO1Q15800 293 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 FBLN7Q53RD9 439 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 C5orf24Q7Z6I8 188 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 CENPVQ7Z7K6 275 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 NPBQ8NG41 125 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 BORCS5Q969J3 196 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 TSNAXQ99598 290 aaKnown RBP11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 SCPEP1Q9HB40 452 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 NECAP2Q9NVZ3 263 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 ADAM30Q9UKF2 790 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 OR2W1Q9Y3N9 320 aa11.41□□□□□ -0.58
CCDC88C-207ENST00000554051 PSMB11A5LHX3 300 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 ZNF736B4DX44 427 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 H7C2Y5 167 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 M0R1X1 148 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 NDUFA3O95167 84 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 HLA-DRB1P01911 266 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 OR8U9P0C7N5 309 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 SLC6A1P30531 599 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 TAS2R46P59540 309 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 KRTAP10-3P60369 221 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 RTL8BQ17RB0 113 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 TMEM95Q3KNT9 176 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 TREML4Q6UXN2 200 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 CLVS1Q8IUQ0 354 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 ZNF645Q8N7E2 425 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 OR8U1Q8NH10 309 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 PLSCR3Q9NRY6 295 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 CCDC59Q9P031 241 aaKnown RBP11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 COMMD3Q9UBI1 195 aa11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 ZNF107Q9UII5 783 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 ELF5Q9UKW6 265 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-207ENST00000554051 IGKV1D-8A0A087WSZ0 117 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 PRSS3P35030 304 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 Q6ZS46 218 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 OR4F17Q8NGA8 305 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 OR5AU1Q8NGC0 362 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 OR4F4Q96R69 305 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 NAA50Q9GZZ1 169 aaKnown RBP11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 SDHAF2Q9NX18 166 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 RABL2AQ9UBK7 228 aaPredicted RBP11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 RNF150Q9ULK6 438 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 ANAPC10Q9UM13 185 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 RABL2BQ9UNT1 228 aa11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 MRPS7Q9Y2R9 242 aaKnown RBP11.39□□□□□ -0.59
CCDC88C-207ENST00000554051 SULT1C2O00338 296 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 TUSC2O75896 110 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 HLA-DQB1P01920 261 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 EIF4EP06730 217 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 VDAC1P21796 283 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 SRSF4Q08170 494 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 C5orf64Q2M2E5 130 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 STPG2Q8N412 459 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 OR5AP2Q8NGF4 316 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 FLYWCH2Q96CP2 140 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 HSD17B10Q99714 261 aaKnown RBP11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 SLC35D1Q9NTN3 355 aa11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 TSSC4Q9Y5U2 329 aaPredicted RBP11.38□□□□□ -0.59
CCDC88C-207ENST00000554051 SH2D7A6NKC9 451 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 FAM25AB3EWG3 89 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 FAM25CB3EWG5 89 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 FAM25GB3EWG6 89 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 RRHO14718 337 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 CREBL2O60519 120 aaPredicted RBP11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 IGF1P05019 195 aa11.37□□□□□ -0.59
CCDC88C-207ENST00000554051 LGALS7P47929 136 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms