RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 H7C2Y5 167 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 NBR2O15453 112 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 OR5H8P0DN80 308 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 PF4V1P10720 104 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 SLC6A1P30531 599 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 TAGLNQ01995 201 aaKnown RBP12.11□□□□□ -0.47
SHMT2-204ENST00000553324 TCTEX1D4Q5JR98 221 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 LIN54Q6MZP7 749 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 ZNF329Q86UD4 541 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 NOL4LQ96MY1 436 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-204ENST00000553324 ZNF107Q9UII5 783 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-204ENST00000553324 ZNF580Q9UK33 172 aa12.11□□□□□ -0.47
SHMT2-204ENST00000553324 VWFP04275 2813 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 ADARB2-AS1A8MUL3 147 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 H0YJW9 148 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 IGF1P05019 195 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 TFAP2AP05549 437 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 OR8U9P0C7N5 309 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 VDAC1P21796 283 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 RPS19P39019 145 aaKnown RBP12.1□□□□□ -0.47
SHMT2-204ENST00000553324 C5orf64Q2M2E5 130 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 HIST2H2BDQ6DRA6 164 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 OR5H6Q8NGV6 325 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 OR8U1Q8NH10 309 aa12.1□□□□□ -0.47
SHMT2-204ENST00000553324 S100A16Q96FQ6 103 aaKnown RBP12.1□□□□□ -0.47
SHMT2-204ENST00000553324 TRAV18A0A075B6X5 111 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 A0A1W2PRX2 142 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 TMEM235A6NFC5 223 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 LINC01548A6NM66 108 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 SLC22A5O76082 557 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 NDUFA3O95167 84 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 HLA-DRB1P01911 266 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 APOA2P02652 100 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 LSM3P62310 102 aaKnown RBP12.09□□□□□ -0.47
SHMT2-204ENST00000553324 KHDC1LQ5JSQ8 128 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 CNIH2Q6PI25 160 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 FAM131AQ6UXB0 335 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 PDPNQ86YL7 162 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 MAFIPQ8WZ33 124 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 KCTD12Q96CX2 325 aaKnown RBP12.09□□□□□ -0.47
SHMT2-204ENST00000553324 RITA1Q96K30 269 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 FUNDC2Q9BWH2 189 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 LINC00527Q9UJ94 153 aa12.09□□□□□ -0.47
SHMT2-204ENST00000553324 ELF5Q9UKW6 265 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-204ENST00000553324 RRHO14718 337 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 PROP1O75360 226 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 ELANEP08246 267 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 CBX3Q13185 183 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 PLGLAQ15195 96 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 C10orf99Q6UWK7 81 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 GLDNQ6ZMI3 551 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-204ENST00000553324 H1FOOQ8IZA3 346 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-204ENST00000553324 OR13F1Q8NGS4 319 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 SLC25A46Q96AG3 418 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 FLYWCH2Q96CP2 140 aaKnown RBP12.08□□□□□ -0.48
SHMT2-204ENST00000553324 SLC25A38Q96DW6 304 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 TSNAXQ99598 290 aaKnown RBP12.08□□□□□ -0.48
SHMT2-204ENST00000553324 HSPB9Q9BQS6 159 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 OR2D2Q9H210 308 aa12.08□□□□□ -0.48
SHMT2-204ENST00000553324 M0R1X1 148 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 XRCC3O43542 346 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 PF4P02776 101 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 RRASP10301 218 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 CBX5P45973 191 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 LGALS7P47929 136 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 RPS16P62249 146 aaKnown RBP12.07□□□□□ -0.48
SHMT2-204ENST00000553324 DEFA6Q01524 100 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 FOXE3Q13461 319 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 CXorf66Q5JRM2 361 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-204ENST00000553324 ZNF660Q6AZW8 331 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-204ENST00000553324 ZNF383Q8NA42 475 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 DRAXINQ8NBI3 349 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-204ENST00000553324 WFDC9Q8NEX5 89 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 NUDCD2Q8WVJ2 157 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 ADTRPQ96IZ2 230 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 OR51J1Q9H342 316 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 SDHAF2Q9NX18 166 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 ANXA10Q9UJ72 324 aa12.07□□□□□ -0.48
SHMT2-204ENST00000553324 IGKV1D-8A0A087WSZ0 117 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 SPDEFO95238 335 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 IGHG4P01861 327 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 CNTFRP26992 372 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 TGFBR1P36897 503 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 THBS3P49746 956 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 LUMP51884 338 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-204ENST00000553324 RPL23AP62750 156 aaKnown RBP12.06□□□□□ -0.48
SHMT2-204ENST00000553324 TMEM267Q0VDI3 215 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-204ENST00000553324 UBE2NLQ5JXB2 153 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 CMTM3Q96MX0 182 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 AUNIPQ9H7T9 357 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 SLC35D1Q9NTN3 355 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 OR2W1Q9Y3N9 320 aa12.06□□□□□ -0.48
SHMT2-204ENST00000553324 IGHV7-81A0A0B4J1V7 117 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 SSX5O60225 188 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 HLA-DQB1P01920 261 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 CD33P20138 364 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 ARPC4P59998 168 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 RTL8BQ17RB0 113 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 TMEM65Q6PI78 240 aa12.05□□□□□ -0.48
SHMT2-204ENST00000553324 ZNF562Q6V9R5 426 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms