RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ODF4Q2M2E3 257 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF829Q3KNS6 432 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-204ENST00000549064 Q6P435 159 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 MMD2Q8IY49 270 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 Q8IYB0 196 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 ELMOD2Q8IZ81 293 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 Q8N402 240 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 ARL6IP6Q8N6S5 226 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 NRACQ8N912 160 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 BBS1Q8NFJ9 593 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 OR2T33Q8NG76 320 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 OR11H4Q8NGC9 324 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 CCDC107Q8WV48 283 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 FAM46BQ96A09 425 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 RFT1Q96AA3 541 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 ATG101Q9BSB4 218 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 KRTAP4-6Q9BYQ5 205 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 ANKRD60Q9BZ19 345 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 PLEKHA1Q9HB21 404 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 HMG20AQ9NP66 347 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 PTTG2Q9NZH5 202 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 DAPK2Q9UIK4 370 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 BLOC1S6Q9UL45 172 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 BAIAP2Q9UQB8 552 aa4.84□□□□□ -1.63
LIMA1-204ENST00000549064 FOXA2Q9Y261 457 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-204ENST00000549064 STRAPQ9Y3F4 350 aaKnown RBP4.84□□□□□ -1.63
LIMA1-204ENST00000549064 IGLV5-52A0A0A0MRZ9 124 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 TRAV24A0A0B4J272 114 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 SLC31A2O15432 143 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 VHLP40337 213 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 NKX2-1P43699 371 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 CAMLGP49069 296 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 FUT6P51993 359 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 RIDAP52758 137 aaKnown RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 RELQ04864 619 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 TNFRSF9Q07011 255 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 KLF9Q13886 244 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 KLF5Q13887 457 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 BCL2L15Q5TBC7 163 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 PXDC1Q5TGL8 231 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 GLYATQ6IB77 296 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 Q6ZSR3 168 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 ARPINQ7Z6K5 226 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 CROCCP2Q86T23 111 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 CROCCP3Q8IVE0 287 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 MAPKAPK5-AS1Q8N8E1 139 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF565Q8N9K5 539 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 AQP11Q8NBQ7 271 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 PLPPR1Q8TBJ4 325 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 APOL4Q9BPW4 351 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 KCTD14Q9BQ13 255 aaPredicted RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 FAM103A1Q9BTL3 118 aaKnown RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 MROQ9BYG7 248 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 COMMD4Q9H0A8 199 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 LINC00574Q9H8X3 128 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 GSN-AS1Q9NRJ2 163 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 MRM2Q9UI43 246 aaKnown RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 OR52A1Q9UKL2 312 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 IKZF2Q9UKS7 526 aa4.83□□□□□ -1.64
LIMA1-204ENST00000549064 SAMD4AQ9UPU9 718 aaKnown RBP4.83□□□□□ -1.64
LIMA1-204ENST00000549064 IGKV1-9A0A0C4DH69 117 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 MSGN1A6NI15 193 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 DHRS7CA6NNS2 312 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 E9PI62 339 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 DEGS1O15121 323 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 RTL8CO15255 209 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 CYB5AP00167 134 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 ZP3P21754 424 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 RBP2P50120 134 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 ATP1B3P54709 279 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 ACTBP60709 375 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 DEFA5Q01523 94 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 CDK5R1Q15078 307 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 MAPRE2Q15555 327 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 RSBN1Q5VWQ0 802 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-204ENST00000549064 METTL21CQ5VZV1 264 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 C8orf82Q6P1X6 216 aaPredicted RBP4.82□□□□□ -1.64
LIMA1-204ENST00000549064 FAM122CQ6P4D5 195 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 DEGS2Q6QHC5 323 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF679Q8IYX0 411 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 LINC00311Q8N616 119 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 ZNF114Q8NC26 417 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 OR51T1Q8NGJ9 327 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 OR5D18Q8NGL1 313 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 TMED6Q8WW62 240 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 PYURFQ96I23 114 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 CHST5Q9GZS9 411 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 TMBIM4Q9HC24 238 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 IL1RAPQ9NPH3 570 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 SAR1AQ9NR31 198 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 NDE1Q9NXR1 346 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 SLC2A8Q9NY64 477 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 AP3M1Q9Y2T2 418 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 SELENOKQ9Y6D0 94 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 R4GMQ9 66 aa4.82□□□□□ -1.64
LIMA1-204ENST00000549064 H0YJX3 145 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 TNFRSF11BO00300 401 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 SDCBPO00560 298 aaPredicted RBP4.81□□□□□ -1.64
LIMA1-204ENST00000549064 FCN1O00602 326 aa4.81□□□□□ -1.64
LIMA1-204ENST00000549064 ARPC1BO15143 372 aaKnown RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms