RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MMP26Q9NRE1 261 aa9.23□□□□□ -0.93
CUX1-212ENST00000547394 TNCP24821 2201 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 K7ENP7 123 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 GAPDHP04406 335 aaKnown RBP9.22□□□□□ -0.93
CUX1-212ENST00000547394 GRNP28799 593 aaKnown RBP9.22□□□□□ -0.93
CUX1-212ENST00000547394 NHLH1Q02575 133 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 PRB3Q04118 309 aaPredicted RBP9.22□□□□□ -0.93
CUX1-212ENST00000547394 GPR157Q5UAW9 335 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 OR8G2PQ6IF36 304 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 CLN8Q9UBY8 286 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 DNASE2O00115 360 aaPredicted RBP9.22□□□□□ -0.93
CUX1-212ENST00000547394 PROP1O75360 226 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 CD55P08174 381 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 OR4A8P0C604 315 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 NPBWR1P48145 328 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 CEBPGP53567 150 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 OR2B8PP59922 312 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 NCR3LG1Q68D85 454 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 BTNL8Q6UX41 500 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 ZNF645Q8N7E2 425 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 AKR1E2Q96JD6 320 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 RSG1Q9BU20 258 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 UQCC1Q9NVA1 299 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 DYSFO75923 2080 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 NPIPB11E5RHQ5 1161 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 C15orf65H3BRN8 121 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 PITX3O75364 302 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 ATG12O94817 140 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 CLDN1O95832 211 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 TSPAN15O95858 294 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 SFTA3P0C7M3 94 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 SPP1P10451 314 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 GNG10P50151 68 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 EIF5AL1Q6IS14 154 aaKnown RBP9.22□□□□□ -0.93
CUX1-212ENST00000547394 C20orf24Q9BUV8 137 aa9.22□□□□□ -0.93
CUX1-212ENST00000547394 FAM212BQ9NTI7 297 aaPredicted RBP9.22□□□□□ -0.93
CUX1-212ENST00000547394 LIN7CQ9NUP9 197 aaKnown RBP9.22□□□□□ -0.93
CUX1-212ENST00000547394 PKD1L2Q7Z442 2459 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 RNASEK-C17orf49H0YIS7 233 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 MMP23AO75900 390 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 CD200P41217 278 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 EIF5AP63241 154 aaKnown RBP9.21□□□□□ -0.93
CUX1-212ENST00000547394 SLC25A24Q6NUK1 477 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 WFIKKN1Q96NZ8 548 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 RARRES2Q99969 163 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 GINS3Q9BRX5 216 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 EIF5A2Q9GZV4 153 aaKnown RBP9.21□□□□□ -0.93
CUX1-212ENST00000547394 CACFD1Q9UGQ2 172 aa9.21□□□□□ -0.93
CUX1-212ENST00000547394 ZFYVE26Q68DK2 2539 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 VPS13CQ709C8 3753 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 FAM90A27PA6NNH2 459 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 SPINT2O43291 252 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 SYNGR2O43760 224 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 CLDN14O95500 239 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 HAPLN4Q86UW8 402 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 THNSL2Q86YJ6 484 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 AGMATQ9BSE5 352 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 NKX6-2Q9C056 277 aaPredicted RBP9.21□□□□□ -0.94
CUX1-212ENST00000547394 C19orf12Q9NSK7 152 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 PSENENQ9NZ42 101 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 HIVEP3Q5T1R4 2406 aa9.21□□□□□ -0.94
CUX1-212ENST00000547394 IGLV3-9A0A075B6K5 115 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 RAB19A4D1S5 217 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 TMPRSS2O15393 492 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 FCGR3BO75015 233 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 DANCRP0C864 163 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 LINC01560Q8TB33 94 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 SAV1Q9H4B6 383 aaPredicted RBP9.2□□□□□ -0.94
CUX1-212ENST00000547394 VSIRQ9H7M9 311 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 CFAP46Q8IYW2 2715 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 M0R1X1 148 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 FBP1P09467 338 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 CDSNQ15517 529 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 ADIPOQQ15848 244 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 TMEM108Q6UXF1 575 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 CLRN3Q8NCR9 226 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 PRR7Q8TB68 274 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 CCL17Q92583 94 aa9.2□□□□□ -0.94
CUX1-212ENST00000547394 RAI1Q7Z5J4 1906 aaPredicted RBP9.19□□□□□ -0.94
CUX1-212ENST00000547394 A0A1B0GU03 582 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 CLEC18AA5D8T8 446 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 PLAUP00749 431 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 ACAA1P09110 424 aaPredicted RBP9.19□□□□□ -0.94
CUX1-212ENST00000547394 DEFA4P12838 97 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 GPR12P47775 334 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 DLX1P56177 255 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 SELENOVP59797 346 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 CLEC18CQ8NCF0 446 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 SAT2Q96F10 170 aaPredicted RBP9.19□□□□□ -0.94
CUX1-212ENST00000547394 ARV1Q9H2C2 271 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 ZFP57Q9NU63 452 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 HCFC1P51610 2035 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 K7N7A8 449 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 IFNL4K9M1U5 179 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 HMGB3O15347 200 aaKnown RBP9.19□□□□□ -0.94
CUX1-212ENST00000547394 ZG16O60844 167 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 OR13C7P0DN81 318 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 NDUFB7P17568 137 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 COL8A2P25067 703 aa9.19□□□□□ -0.94
CUX1-212ENST00000547394 F2RL1P55085 397 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms