RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SAXO1Q8IYX7 474 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 CA5BP1Q8WTZ4 195 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 BCL2L2Q92843 193 aaPredicted RBP12.65□□□□□ -0.38
USP28-214ENST00000545540 CABLES2Q9BTV7 478 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 UNKLQ9H9P5 680 aaKnown RBP12.65□□□□□ -0.38
USP28-214ENST00000545540 TMEM9BQ9NQ34 198 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 GAR1Q9NY12 217 aaKnown RBP12.65□□□□□ -0.38
USP28-214ENST00000545540 CXorf65A6NEN9 183 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 HNF1AP20823 631 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 ACP1P24666 158 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 UNQ6494/PRO21346Q6UXR6 183 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 SDSLQ96GA7 329 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 SMIM7Q9BQ49 75 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 CDH20Q9HBT6 801 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 MPC1Q9Y5U8 109 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 NBASA2RRP1 2371 aa12.65□□□□□ -0.38
USP28-214ENST00000545540 C12orf77C9JDV5 145 aa12.65□□□□□ -0.39
USP28-214ENST00000545540 ZNF497Q6ZNH5 498 aa12.65□□□□□ -0.39
USP28-214ENST00000545540 PGPEP1LA6NFU8 196 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 OR5B21A6NL26 309 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 UBE2NP61088 152 aaKnown RBP12.64□□□□□ -0.39
USP28-214ENST00000545540 OR8G1Q15617 311 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 TMEM164Q5U3C3 297 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 OR51G1Q8NGK1 321 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 RTL8AQ9BWD3 113 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 TNRC6AQ8NDV7 1962 aaKnown RBP12.64□□□□□ -0.39
USP28-214ENST00000545540 SS18L1O75177 396 aaPredicted RBP12.64□□□□□ -0.39
USP28-214ENST00000545540 HAND1O96004 215 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 IGHV2-70P01814 119 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 CDX1P47902 265 aaPredicted RBP12.64□□□□□ -0.39
USP28-214ENST00000545540 UTF1Q5T230 341 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 TAF15Q92804 592 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP28-214ENST00000545540 LEAP2Q969E1 77 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 TRIB1Q96RU8 372 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 WDR61Q9GZS3 305 aaKnown RBP12.64□□□□□ -0.39
USP28-214ENST00000545540 ABI3Q9P2A4 366 aa12.64□□□□□ -0.39
USP28-214ENST00000545540 SMPD2O60906 423 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 HBE1P02100 147 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 TBC1D28Q2M2D7 210 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 OR4F5Q8NH21 305 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 OR4F4Q96R69 305 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 TREM2Q9NZC2 230 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 TRGV5A0A0B4J1U4 118 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 ODAMA1E959 279 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 SMCO3A2RU48 225 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 BTBD17A6NE02 478 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 PPP1R2P9O14990 202 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 IGHV1-2P23083 117 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 BRWD1-AS2P59051 145 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 LRRC75BQ2VPJ9 315 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 SP5Q6BEB4 398 aaPredicted RBP12.63□□□□□ -0.39
USP28-214ENST00000545540 S100PBPQ96BU1 408 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 PSG11Q9UQ72 335 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 A0A1B0GW64 132 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 SH2D1BO14796 132 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 HBZP02008 142 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 CCL11P51671 97 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 CD81P60033 236 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 GAMTQ14353 236 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 Q3ZCU0 254 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 GTF3AQ92664 365 aaKnown RBP12.63□□□□□ -0.39
USP28-214ENST00000545540 MALSU1Q96EH3 234 aa12.63□□□□□ -0.39
USP28-214ENST00000545540 RIMS4Q9H426 269 aaPredicted RBP12.63□□□□□ -0.39
USP28-214ENST00000545540 C1QTNF9BB2RNN3 333 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 HBG1P69891 147 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 HBG2P69892 147 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 S100A12P80511 92 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 TNFRSF9Q07011 255 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 KLF14Q8TD94 323 aaPredicted RBP12.62□□□□□ -0.39
USP28-214ENST00000545540 SPRY4Q9C004 299 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 LAMP3Q9UQV4 416 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 A0A1W2PPQ1 181 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 LRP5LA4QPB2 252 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 LINC00473A8K010 186 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 MLNRO43193 412 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 PTBP3O95758 552 aaKnown RBP12.62□□□□□ -0.39
USP28-214ENST00000545540 CEACAM1P13688 526 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 FGF7P21781 194 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 VWA1Q6PCB0 445 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 C16orf82Q7Z2V1 217 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 DEFB123Q8N688 67 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 PRO3102Q9H379 93 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 MRPS18CQ9Y3D5 142 aaKnown RBP12.62□□□□□ -0.39
USP28-214ENST00000545540 AKAP13Q12802 2813 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 TRAV38-1A0A0B4J264 116 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 SOX8P57073 446 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 SDF2L1Q9HCN8 221 aa12.62□□□□□ -0.39
USP28-214ENST00000545540 SVEP1Q4LDE5 3571 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 IGHV3OR15-7A0A075B7D8 119 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.61□□□□□ -0.39
USP28-214ENST00000545540 PAGE4O60829 102 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 RNPS1Q15287 305 aaKnown RBP12.61□□□□□ -0.39
USP28-214ENST00000545540 NRN1LQ496H8 165 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 FFAR4Q5NUL3 377 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 SLC35E3Q7Z769 313 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 TMEM37Q8WXS4 190 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 GALMQ96C23 342 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 PATZ1Q9HBE1 687 aaKnown RBP12.61□□□□□ -0.39
USP28-214ENST00000545540 GP6Q9HCN6 339 aa12.61□□□□□ -0.39
USP28-214ENST00000545540 LIN7CQ9NUP9 197 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms