RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TRAM2Q15035 370 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 OR7A5Q15622 319 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 TOMM34Q15785 309 aaPredicted RBP2.4□□□□□ -2.03
CD44-235ENST00000532339 KCNJ8Q15842 424 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 RAB11BQ15907 218 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 ZNF181Q2M3W8 571 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 CT45A1Q5HYN5 189 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 TMEM255AQ5JRV8 349 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 PLCXD3Q63HM9 321 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 TTC19Q6DKK2 380 aaPredicted RBP2.4□□□□□ -2.03
CD44-235ENST00000532339 SLC48A1Q6P1K1 146 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 H2AFVQ71UI9 128 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 LY6G5BQ8NDX9 201 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 CT45A3Q8NHU0 189 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 RPS4Y2Q8TD47 263 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 ACTRT1Q8TDG2 376 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 EEF1AKMT1Q8WVE0 214 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 FAM3DQ96BQ1 224 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 ASB9Q96DX5 294 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 RNF185Q96GF1 192 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 TSSK3Q96PN8 268 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 OR51B5Q9H339 312 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 NUFIP1Q9UHK0 495 aaKnown RBP2.4□□□□□ -2.03
CD44-235ENST00000532339 HDGFL3Q9Y3E1 203 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 LPAP08519 4548 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 IGHV3-64DA0A0J9YX35 117 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 PLAC8L1A1L4L8 177 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 ZNF99A8MXY4 864 aaPredicted RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 IGLL5B9A064 214 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 OVOL1O14753 267 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 NUPL2O15504 423 aaKnown RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 CST8O60676 142 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 FKBP6O75344 327 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 FCN3O75636 299 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 PROSCO94903 275 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 CCNB2O95067 398 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 UBL3O95164 117 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 GNAO1P09471 354 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 UBCP0CG48 685 aaKnown RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 OGNP20774 298 aaKnown RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 PRPS1L1P21108 318 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 IVDP26440 423 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 MAS1LP35410 378 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 GGT2P36268 569 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 SLC1A2P43004 574 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 DYNLT3P51808 116 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 RND2P52198 227 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 OR2B6P58173 313 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 SLC35A1P78382 337 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 QPRTQ15274 297 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 RSPO1Q2MKA7 263 aaPredicted RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 CEACAM16Q2WEN9 425 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 STUMQ69YW2 141 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 FAM45BPQ6NSW5 357 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 TEX43Q6ZNM6 134 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 ZNF493Q6ZR52 646 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 MTERF4Q7Z6M4 381 aaKnown RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 APRG1Q8IVJ8 170 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 MREGQ8N565 214 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 JAGN1Q8N5M9 183 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 DRAM1Q8N682 238 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 ZFP41Q8N8Y5 198 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 CCDC54Q8NEL0 328 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 SLC30A7Q8NEW0 376 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 OR2Z1Q8NG97 314 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 OR51G1Q8NGK1 321 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 OR10J6PQ8NGY7 276 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 ZNF420Q8TAQ5 688 aaPredicted RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 FAM45AQ8TCE6 357 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 CD300LFQ8TDQ1 290 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 GPR119Q8TDV5 335 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 OR2V2Q96R30 315 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 EBPLQ9BY08 206 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 C1orf198Q9H425 327 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 METTL8Q9H825 291 aaKnown RBP2.39□□□□□ -2.03
CD44-235ENST00000532339 UBQLN4Q9NRR5 601 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 CES1P1Q9UKY3 287 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 CFAP45Q9UL16 551 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 RHBDD3Q9Y3P4 386 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 ZNF780BQ9Y6R6 833 aa2.39□□□□□ -2.03
CD44-235ENST00000532339 NACAE9PAV3 2078 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 IGLV2-18A0A075B6J9 118 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 PRSS37A4D1T9 235 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 SMKR1H3BMG3 65 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 H3BSA7 217 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 H7C0C1 242 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 M0R3G1 203 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 SIVA1O15304 175 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 NDUFA2O43678 99 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 IGKV1D-16P01601 117 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 SNRPAP09012 282 aaKnown RBP2.38□□□□□ -2.03
CD44-235ENST00000532339 OR8U9P0C7N5 309 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 PGA5P0DJD9 388 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 LCN1P31025 176 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 BMI1P35226 326 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 MPV17P39210 176 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 CXCL5P42830 114 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 NMUP48645 174 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 ZNF138P52744 262 aa2.38□□□□□ -2.03
CD44-235ENST00000532339 UBE2MP61081 183 aaKnown RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms