RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ALX4Q9H161 411 aaPredicted RBP11.43□□□□□ -0.58
VPS28-215ENST00000531924 LPAR5Q9H1C0 372 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 OR1A1Q9P1Q5 309 aa11.43□□□□□ -0.58
VPS28-215ENST00000531924 KMT2CQ8NEZ4 4911 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 TRBV6-6A0A0A6YYG2 114 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 FCN1O00602 326 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 SLC17A2O00624 439 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 APOA2P02652 100 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 PSMA1P25786 263 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 VEGFCP49767 419 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 SLURP1P55000 103 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 TPPP2P59282 170 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 RPS16P62249 146 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 QRFPP83859 136 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 NDPQ00604 133 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 ASPHD1Q5U4P2 390 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 DRAXINQ8NBI3 349 aaPredicted RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 OR6Q1Q8NGQ2 317 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 DLX4Q92988 240 aaPredicted RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 FLYWCH2Q96CP2 140 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 MS4A10Q96PG2 267 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 OR4C12Q96R67 309 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 CMSS1Q9BQ75 279 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 HDHD3Q9BSH5 251 aaPredicted RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 CCDC90BQ9GZT6 254 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 TOLLIPQ9H0E2 274 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 PARP12Q9H0J9 701 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 ZNF355PQ9NSJ1 428 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 HSF4Q9ULV5 492 aa11.42□□□□□ -0.58
VPS28-215ENST00000531924 LSM2Q9Y333 95 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 AK6Q9Y3D8 172 aaKnown RBP11.42□□□□□ -0.58
VPS28-215ENST00000531924 A0A0A6YYD4 124 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 CNIH1O95406 144 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 IGHV3-11P01762 117 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 PITPNAQ00169 270 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 PSG5Q15238 335 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 CD200R1LQ6Q8B3 271 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 ZNF562Q6V9R5 426 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 LFNGQ8NES3 379 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 OR56B1Q8NGI3 324 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 OR5AN1Q8NGI8 311 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 ARPC1AQ92747 370 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 FAM103A1Q9BTL3 118 aaKnown RBP11.41□□□□□ -0.58
VPS28-215ENST00000531924 SLA2Q9H6Q3 261 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 Q9N2K0 584 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 FBXO7Q9Y3I1 522 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 NUBP2Q9Y5Y2 271 aa11.41□□□□□ -0.58
VPS28-215ENST00000531924 IGHV4OR15-8A0A075B7B6 117 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 A0A087WW49 117 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 TRDCB7Z8K6 153 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 RGS10O43665 173 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 SOX15O60248 233 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 SPDEFO95238 335 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 CA2P00918 260 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 TRGV3P03979 118 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 HSPB1P04792 205 aaKnown RBP11.4□□□□□ -0.58
VPS28-215ENST00000531924 TFAP2AP05549 437 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 SCTP09683 121 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 OR8U9P0C7N5 309 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 CALRP27797 417 aaKnown RBP11.4□□□□□ -0.58
VPS28-215ENST00000531924 SERPINB10P48595 397 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 PSMD7P51665 324 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 CRIP2P52943 208 aaPredicted RBP11.4□□□□□ -0.58
VPS28-215ENST00000531924 RPS25P62851 125 aaKnown RBP11.4□□□□□ -0.58
VPS28-215ENST00000531924 CBX3Q13185 183 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 AKIRIN2Q53H80 203 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 PDPNQ86YL7 162 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 FAM89BQ8N5H3 189 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 GRPEL2Q8TAA5 225 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 PTX4Q96A99 478 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 ARHGAP5-AS1Q96IT6 56 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 AGMATQ9BSE5 352 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 ELOVL1Q9BW60 279 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 GAB2Q9UQC2 676 aa11.4□□□□□ -0.58
VPS28-215ENST00000531924 C13orf42A0A1B0GVH6 325 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 ERICH4A6NGS2 130 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 M0R1X1 148 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 ARPC1BO15143 372 aaKnown RBP11.39□□□□□ -0.59
VPS28-215ENST00000531924 DENRO43583 198 aaKnown RBP11.39□□□□□ -0.59
VPS28-215ENST00000531924 CD3GP09693 182 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 CD37P11049 281 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 CLDN12P56749 244 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 TPBGQ13641 420 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 FXYD3Q14802 87 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 C19orf54Q5BKX5 351 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 FAM3DQ96BQ1 224 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 PECRQ9BY49 303 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 RDH8Q9NYR8 311 aa11.39□□□□□ -0.59
VPS28-215ENST00000531924 C3orf84H3BNL1 204 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 SLC25A17O43808 307 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 IGKV1-16P04430 117 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 EGR2P11161 476 aaPredicted RBP11.38□□□□□ -0.59
VPS28-215ENST00000531924 GP9P14770 177 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 SPNP16150 400 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 MLLT11Q13015 90 aaPredicted RBP11.38□□□□□ -0.59
VPS28-215ENST00000531924 IRF3Q14653 427 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 C2orf76Q3KRA6 126 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 ACSM6Q6P461 480 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 TMEM91Q6ZNR0 172 aa11.38□□□□□ -0.59
VPS28-215ENST00000531924 ZNF383Q8NA42 475 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms