RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 A0A075B6Q4 140 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 IGHV7-81A0A0B4J1V7 117 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 A0A0B4J203 849 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 IGKV1-6A0A0C4DH72 117 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 METTL21EPA6NDL7 271 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 CCL24O00175 119 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 MFNGO00587 321 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 RRHO14718 337 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 FABP7O15540 132 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 GSTP1P09211 210 aaKnown RBP10.42□□□□□ -0.74
VPS28-211ENST00000530790 HIST1H1DP16402 221 aaKnown RBP10.42□□□□□ -0.74
VPS28-211ENST00000530790 PSMB8P28062 276 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 CDX1P47902 265 aaPredicted RBP10.42□□□□□ -0.74
VPS28-211ENST00000530790 DEFB136Q30KP8 78 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 TMEM65Q6PI78 240 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 C4orf3Q8WVX3 66 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 RAX2Q96IS3 184 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 CABLES2Q9BTV7 478 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 YTHDF1Q9BYJ9 559 aaKnown RBP10.42□□□□□ -0.74
VPS28-211ENST00000530790 STUB1Q9UNE7 303 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 KCNK7Q9Y2U2 307 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 WSB1Q9Y6I7 421 aa10.42□□□□□ -0.74
VPS28-211ENST00000530790 TRAV41A0A0B4J266 112 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 SMIM30A4D0T7 59 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 G3V318 75 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 RAB27BO00194 218 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 BET1O15155 118 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 APOA2P02652 100 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 TFAP2AP05549 437 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 GNB3P16520 340 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 HOXD3P31249 432 aaPredicted RBP10.41□□□□□ -0.74
VPS28-211ENST00000530790 EGFEM1PQ0D2K5 195 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 ARFRP1Q13795 201 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 ECSCRQ19T08 205 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 NR2C2APQ86WQ0 139 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 DRAXINQ8NBI3 349 aaPredicted RBP10.41□□□□□ -0.74
VPS28-211ENST00000530790 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.41□□□□□ -0.74
VPS28-211ENST00000530790 OR5AN1Q8NGI8 311 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 FBXL15Q9H469 300 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 TXNL4BQ9NX01 149 aaKnown RBP10.41□□□□□ -0.74
VPS28-211ENST00000530790 RNF150Q9ULK6 438 aa10.41□□□□□ -0.74
VPS28-211ENST00000530790 NOTOA8MTQ0 251 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 DIRAS3O95661 229 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 PPIFP30405 207 aaKnown RBP10.4□□□□□ -0.74
VPS28-211ENST00000530790 FGF9P31371 208 aaPredicted RBP10.4□□□□□ -0.74
VPS28-211ENST00000530790 TALDO1P37837 337 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 NDPQ00604 133 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 ARL6IP1Q15041 203 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 ZNF773Q6PK81 442 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 PDPNQ86YL7 162 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 OR5M8Q8NGP6 311 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 OR10J5Q8NHC4 309 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 MYOZ3Q8TDC0 251 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 ABHD5Q8WTS1 349 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 RNF5Q99942 180 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 GINS4Q9BRT9 223 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 ATG5Q9H1Y0 275 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 OR2D2Q9H210 308 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 METTL1Q9UBP6 276 aaKnown RBP10.4□□□□□ -0.74
VPS28-211ENST00000530790 SSR3Q9UNL2 185 aa10.4□□□□□ -0.74
VPS28-211ENST00000530790 K7EIL1 84 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 M0R1X1 148 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 SPDEFO95238 335 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 IGLV1-40P01703 118 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 GSTT2P0CG29 244 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 GSTT2BP0CG30 244 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 KRTAP10-11P60412 298 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 IGSF11Q5DX21 431 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 ZNF660Q6AZW8 331 aaPredicted RBP10.39□□□□□ -0.75
VPS28-211ENST00000530790 TPRA1Q86W33 373 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 ZNF383Q8NA42 475 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 MAFIPQ8WZ33 124 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 UBE2E2Q96LR5 201 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 TSNAXQ99598 290 aaKnown RBP10.39□□□□□ -0.75
VPS28-211ENST00000530790 CENPOQ9BU64 300 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 TOLLIPQ9H0E2 274 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 ZMAT5Q9UDW3 170 aaKnown RBP10.39□□□□□ -0.75
VPS28-211ENST00000530790 ZNF230Q9UIE0 474 aaPredicted RBP10.39□□□□□ -0.75
VPS28-211ENST00000530790 A3GALT2U3KPV4 340 aa10.39□□□□□ -0.75
VPS28-211ENST00000530790 TRBV6-7A0A0A0MS04 114 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 A0A1W2PN81 502 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 SCGNO76038 276 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 IGKV1-16P04430 117 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 OR8U9P0C7N5 309 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 CHRNA7P36544 502 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 CRIP2P52943 208 aaPredicted RBP10.38□□□□□ -0.75
VPS28-211ENST00000530790 RPS16P62249 146 aaKnown RBP10.38□□□□□ -0.75
VPS28-211ENST00000530790 CX3CL1P78423 397 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 CBX3Q13185 183 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 FHL3Q13643 280 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 SFXN4Q6P4A7 337 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 TCTEX1D1Q8N7M0 179 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 MINDY2Q8NBR6 621 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 CLCC1Q96S66 551 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 KLK15Q9H2R5 256 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 GNB4Q9HAV0 340 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 SLC35D1Q9NTN3 355 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 DAPK2Q9UIK4 370 aa10.38□□□□□ -0.75
VPS28-211ENST00000530790 FOXA2Q9Y261 457 aaPredicted RBP10.38□□□□□ -0.75
VPS28-211ENST00000530790 VSIG4Q9Y279 399 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms