RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 SYCE1Q8N0S2 351 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 DYNC2LI1Q8TCX1 351 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 RNASEH2CQ8TDP1 164 aaKnown RBP1.18□□□□□ -2.22
CD44-215ENST00000525241 PPWD1Q96BP3 646 aaKnown RBP1.18□□□□□ -2.22
CD44-215ENST00000525241 CYTH2Q99418 400 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 GNB1LQ9BYB4 327 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 WDR54Q9H977 334 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 UBQLN4Q9NRR5 601 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 MDC1Q14676 2089 aaKnown RBP1.18□□□□□ -2.22
CD44-215ENST00000525241 CHD6Q8TD26 2715 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 A0A0C4DFX4 3053 aa1.18□□□□□ -2.22
CD44-215ENST00000525241 FLNBO75369 2602 aaKnown RBP1.18□□□□□ -2.22
CD44-215ENST00000525241 F5H5K5 113 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 J3QQQ9 107 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 STK16O75716 305 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 ASS1P00966 412 aaKnown RBP1.17□□□□□ -2.22
CD44-215ENST00000525241 CD7P09564 240 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 OR13C7P0DN81 318 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 CRYBB3P26998 211 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 KDELR2P33947 212 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 DAPP51397 102 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 STC1P52823 247 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 RAB8AP61006 207 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 RPL26P61254 145 aaKnown RBP1.17□□□□□ -2.22
CD44-215ENST00000525241 C1DQ13901 141 aaKnown RBP1.17□□□□□ -2.22
CD44-215ENST00000525241 Q6ZTI0 123 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 BOD1L2Q8IYS8 172 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 CCDC112Q8NEF3 446 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 CCDC12Q8WUD4 166 aaPredicted RBP1.17□□□□□ -2.22
CD44-215ENST00000525241 FGF13Q92913 245 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 ACY3Q96HD9 319 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 IMP3Q9NV31 184 aaKnown RBP1.17□□□□□ -2.22
CD44-215ENST00000525241 RPL26L1Q9UNX3 145 aaKnown RBP1.17□□□□□ -2.22
CD44-215ENST00000525241 SNX10Q9Y5X0 201 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 PUS1Q9Y606 427 aaKnown RBP eCLIP1.17□□□□□ -2.22
CD44-215ENST00000525241 NYNRINQ9P2P1 1898 aaKnown RBP1.17□□□□□ -2.22
CD44-215ENST00000525241 PCNTO95613 3336 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 STAB1Q9NY15 2570 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 HECTD1Q9ULT8 2610 aa1.17□□□□□ -2.22
CD44-215ENST00000525241 EPG5Q9HCE0 2579 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 ITPR3Q14573 2671 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 KDM5BQ9UGL1 1544 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 A0A1B0GVG6 124 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 ERICH2A1L162 156 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 TRPC5OSA6NMA1 111 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 OR5K4A6NMS3 321 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 SLC17A3O00476 420 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 ADORA1P30542 326 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 HSPA9P38646 679 aaKnown RBP1.16□□□□□ -2.22
CD44-215ENST00000525241 CRATP43155 626 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 SERPINB10P48595 397 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 DLX6P56179 175 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 ZNF90Q03938 601 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 EXOC3L4Q17RC7 722 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 PDPK2PQ6A1A2 396 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 SPATA24Q86W54 205 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 LLPHQ9BRT6 129 aaKnown RBP1.16□□□□□ -2.22
CD44-215ENST00000525241 MRPL32Q9BYC8 188 aaKnown RBP1.16□□□□□ -2.22
CD44-215ENST00000525241 ASCL3Q9NQ33 180 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 CHMP5Q9NZZ3 219 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 FAM215AQ9Y5M1 114 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 NCKAP5O14513 1909 aa1.16□□□□□ -2.22
CD44-215ENST00000525241 DOPEY1Q5JWR5 2465 aa1.15□□□□□ -2.22
CD44-215ENST00000525241 ANKRD11Q6UB99 2663 aaPredicted RBP1.15□□□□□ -2.22
CD44-215ENST00000525241 DICER1Q9UPY3 1922 aaKnown RBP1.15□□□□□ -2.22
CD44-215ENST00000525241 MDFIC2A0A1B0GVS7 189 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 GOLGA8RI6L899 631 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 LIN7AO14910 233 aaPredicted RBP1.15□□□□□ -2.23
CD44-215ENST00000525241 TOX3O15405 576 aaPredicted RBP1.15□□□□□ -2.23
CD44-215ENST00000525241 RD3LP0DJH9 198 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 ZNF728P0DKX0 622 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 SYT1P21579 422 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 AGTR1P30556 359 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 UAP1Q16222 522 aaPredicted RBP1.15□□□□□ -2.23
CD44-215ENST00000525241 TBC1D28Q2M2D7 210 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 MESTQ5EB52 335 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 ZNF514Q96K75 400 aaPredicted RBP1.15□□□□□ -2.23
CD44-215ENST00000525241 OR51B6Q9H340 312 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 C1orf109Q9NX04 203 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 GLS2Q9UI32 602 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 FLG2Q5D862 2391 aaPredicted RBP1.15□□□□□ -2.23
CD44-215ENST00000525241 RIMS2Q9UQ26 1411 aa1.15□□□□□ -2.23
CD44-215ENST00000525241 MUC2Q02817 5179 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 LAMB2P55268 1798 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 JMJD1CQ15652 2540 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 PIEZO1Q92508 2521 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 TRGV2A0A075B6R0 118 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 C2orf74A8MZ97 194 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 OR11H12B2RN74 326 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 F8VZ95 297 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 ITGB1BP1O14713 200 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 ARL6IP5O75915 188 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 NAPSAO96009 420 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 ANGP03950 147 aaKnown RBP1.14□□□□□ -2.23
CD44-215ENST00000525241 XCL1P47992 114 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 RPL14P50914 215 aaKnown RBP1.14□□□□□ -2.23
CD44-215ENST00000525241 RAP1GDS1P52306 607 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 EMP2P54851 167 aa1.14□□□□□ -2.23
CD44-215ENST00000525241 KRTAP10-4P60372 401 aaPredicted RBP1.14□□□□□ -2.23
CD44-215ENST00000525241 SPATA31B1PQ5VZV4 182 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms