RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 POP5Q969H6 163 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 FGGYQ96C11 551 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SMIM19Q96E16 107 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 IMP4Q96G21 291 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 KCTD7Q96MP8 289 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CLCC1Q96S66 551 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 MBOAT4Q96T53 435 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TBX5Q99593 518 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CDX2Q99626 313 aaPredicted RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 PKMYT1Q99640 499 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 MRPL57Q9BQC6 102 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 HSPB9Q9BQS6 159 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 C1QTNF6Q9BXI9 259 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CDCA4Q9BXL8 241 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 DUSP16Q9BY84 665 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR11A1Q9GZK7 315 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ARL6Q9H0F7 186 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 NXF5Q9H1B4 397 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR51E2Q9H255 320 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR51I1Q9H343 314 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR52D1Q9H346 318 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CDC42EP4Q9H3Q1 356 aaKnown RBP1.31□□□□□ -2.2
NUP54-208ENST00000508604 RBKSQ9H477 322 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CWH43Q9H720 699 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ELOVL3Q9HB03 270 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 MMP26Q9NRE1 261 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 HEBP1Q9NRV9 189 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CBLN4Q9NTU7 201 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 OR5AC2Q9NZP5 309 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 SS18L2Q9UHA2 77 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 VAX2Q9UIW0 290 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 HSPB8Q9UJY1 196 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ERG28Q9UKR5 140 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 B9D1Q9UPM9 204 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 TPRKBQ9Y3C4 175 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 V9GYY9 64 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 KIAA0556O60303 1618 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 PTPRKQ15262 1439 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 C10orf71Q711Q0 1435 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 CRYBG1Q9Y4K1 1723 aa1.31□□□□□ -2.2
NUP54-208ENST00000508604 ARHGAP5Q13017 1502 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PIK3C2AO00443 1686 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RIMBP3CA6NJZ7 1639 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RIMBP3BA6NNM3 1639 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 EIF2AK4Q9P2K8 1649 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 A0A087WX48 190 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 A0A0D9SG52 128 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 IGHV1-69-2A0A0G2JMI3 117 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 A0A1W2PRE2 83 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PRSS37A4D1T9 235 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 LRP5LA4QPB2 252 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TMEM189A5PLL7 270 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MAP1LC3B2A6NCE7 125 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MCRIP1C9JLW8 97 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 E7EQ34 232 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 F5H5T6 163 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 CLDN5O00501 218 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MFNGO00587 321 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PLPP3O14495 311 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PLA2G10O15496 165 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 LYRM1O43325 122 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 PRKAB2O43741 272 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR1F1O43749 312 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SLC37A4O43826 429 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 EFNA2O43921 213 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MPZL2O60487 215 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 CNMDO75829 334 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TNFSF13O75888 250 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 YIF1AO95070 293 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 MPZL1O95297 269 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 TIMP1P01033 207 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 HLA-HP01893 362 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 APOA2P02652 100 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SERPINE1P05121 402 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 KLK1P06870 262 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RHOCP08134 193 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR5G3P0C626 314 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 ZNF286BP0CG31 522 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SMIM10L2AP0DMW4 78 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 SMIM10L2BP0DMW5 78 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 FABP4P15090 132 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 EVI2AP22794 236 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RPS12P25398 132 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 CD1CP29017 333 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 AGTR1P30556 359 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 OR10J1P30954 320 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 NTSP30990 170 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RPA3P35244 121 aaPredicted RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 OPRD1P41143 372 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 CDKN2BP42772 138 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 KIR2DS4P43632 304 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 GPR6P46095 362 aaPredicted RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 DAP3P51398 398 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 POLR2HP52434 150 aaKnown RBP1.3□□□□□ -2.2
NUP54-208ENST00000508604 LIM2P55344 173 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 DLX6P56179 175 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 NDUFA6P56556 154 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RAB38P57729 211 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RHOAP61586 193 aa1.3□□□□□ -2.2
NUP54-208ENST00000508604 RPS28P62857 69 aaKnown RBP1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms