RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 SSBP2P81877 361 aaPredicted RBP11.16□□□□□ -0.62
TRAF4-212ENST00000498540 FXYD3Q14802 87 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 LCN12Q6JVE5 192 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 LINC00322Q6ZN03 302 aaPredicted RBP11.16□□□□□ -0.62
TRAF4-212ENST00000498540 SVOPQ8N4V2 548 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 DRAXINQ8NBI3 349 aaPredicted RBP11.16□□□□□ -0.62
TRAF4-212ENST00000498540 IL17DQ8TAD2 202 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 AGMATQ9BSE5 352 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 FAAP24Q9BTP7 215 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 ABRACLQ9P1F3 81 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 CLEC2DQ9UHP7 191 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 LRRC42Q9Y546 428 aa11.16□□□□□ -0.62
TRAF4-212ENST00000498540 SHISA3A0PJX4 238 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 H3BUA1 57 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 CIB2O75838 187 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 CAPGP40121 348 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 RASSF2P50749 326 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 LINC00205P59089 165 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 MOGAT2Q3SYC2 334 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 C6orf201Q7Z4U5 140 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 CDH26Q8IXH8 852 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 Q8N402 240 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 SLC29A1Q99808 456 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 RNF5Q99942 180 aa11.15□□□□□ -0.62
TRAF4-212ENST00000498540 A0A0G2JLM5 398 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 PNMA8CA0A1B0GUJ8 204 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 SLC25A17O43808 307 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 PROP1O75360 226 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 SPDEFO95238 335 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 CPEP16870 476 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 OR10K2Q6IF99 312 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 NEDD4LQ96PU5 975 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 DERL3Q96Q80 235 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 TSNAXQ99598 290 aaKnown RBP11.14□□□□□ -0.63
TRAF4-212ENST00000498540 SIGLEC8Q9NYZ4 499 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 OR1A1Q9P1Q5 309 aa11.14□□□□□ -0.63
TRAF4-212ENST00000498540 DIMT1Q9UNQ2 313 aaKnown RBP11.14□□□□□ -0.63
TRAF4-212ENST00000498540 NAPSAO96009 420 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 MYL12AP19105 171 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 CD81P60033 236 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 RPS16P62249 146 aaKnown RBP11.13□□□□□ -0.63
TRAF4-212ENST00000498540 PJVKQ0ZLH3 352 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 DYRK1AQ13627 763 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 RNLSQ5VYX0 342 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 ZNF343Q6P1L6 599 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 ZNF880Q6PDB4 577 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 ZNF383Q8NA42 475 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 ZNF485Q8NCK3 441 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 SETD6Q8TBK2 473 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 LINC00476Q8WZB0 136 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 UQCC2Q9BRT2 126 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 C11orf54Q9H0W9 315 aaPredicted RBP11.13□□□□□ -0.63
TRAF4-212ENST00000498540 WFDC10AQ9H1F0 79 aa11.13□□□□□ -0.63
TRAF4-212ENST00000498540 CHMP1AQ9HD42 196 aaPredicted RBP11.13□□□□□ -0.63
TRAF4-212ENST00000498540 PEF1Q9UBV8 284 aaKnown RBP11.13□□□□□ -0.63
TRAF4-212ENST00000498540 EXOSC1Q9Y3B2 195 aaKnown RBP11.13□□□□□ -0.63
TRAF4-212ENST00000498540 FRAS1Q86XX4 4008 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 RBMY1BA6NDE4 496 aaKnown RBP11.12□□□□□ -0.63
TRAF4-212ENST00000498540 RBMY1EA6NEQ0 496 aaKnown RBP11.12□□□□□ -0.63
TRAF4-212ENST00000498540 ITGB1BP1O14713 200 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 RBMXL2O75526 392 aaKnown RBP11.12□□□□□ -0.63
TRAF4-212ENST00000498540 CNIH1O95406 144 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 BRI3O95415 125 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 RBMY1DP0C7P1 496 aaKnown RBP11.12□□□□□ -0.63
TRAF4-212ENST00000498540 MECP2P51608 486 aaKnown RBP11.12□□□□□ -0.63
TRAF4-212ENST00000498540 RPEL1Q2QD12 228 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 NKAIN3Q8N8D7 197 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 BVESQ8NE79 360 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 NEURL2Q9BR09 285 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 NICN1Q9BSH3 213 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 C9orf16Q9BUW7 83 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 TINAGL1Q9GZM7 467 aaPredicted RBP11.12□□□□□ -0.63
TRAF4-212ENST00000498540 KCNK15Q9H427 330 aa11.12□□□□□ -0.63
TRAF4-212ENST00000498540 DYNC1I1O14576 645 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 ATP5HO75947 161 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 OR2A4O95047 310 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 IGLV2-23P01705 113 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 CD7P09564 240 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 HTR2CP28335 458 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 RPS27AP62979 156 aaKnown RBP11.11□□□□□ -0.63
TRAF4-212ENST00000498540 MOB1BQ7L9L4 216 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 PDPNQ86YL7 162 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 DEFB125Q8N687 156 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 HDHD3Q9BSH5 251 aaPredicted RBP11.11□□□□□ -0.63
TRAF4-212ENST00000498540 GHRLQ9UBU3 117 aa11.11□□□□□ -0.63
TRAF4-212ENST00000498540 IRGMA1A4Y4 181 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 TPPPO94811 219 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 APELAP0DMC3 54 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 AADACP22760 399 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 CEACAM6P40199 344 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 HLA-DRB3P79483 266 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 UNC119Q13432 240 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 TATDN3Q17R31 274 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 CD300EQ496F6 205 aaPredicted RBP11.1□□□□□ -0.63
TRAF4-212ENST00000498540 ZFP1Q6P2D0 407 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 OR2K2Q8NGT1 345 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 EDARADDQ8WWZ3 215 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 TMEM59Q9BXS4 323 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 SRD5A3Q9H8P0 318 aa11.1□□□□□ -0.63
TRAF4-212ENST00000498540 COA4Q9NYJ1 87 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms