RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ARV1Q9H2C2 271 aa3.25□□□□□ -1.89
SF3B1-212ENST00000496458 RNF122Q9H9V4 155 aa3.25□□□□□ -1.89
SF3B1-212ENST00000496458 TMEM27Q9HBJ8 222 aa3.25□□□□□ -1.89
SF3B1-212ENST00000496458 SLC2A9Q9NRM0 540 aa3.25□□□□□ -1.89
SF3B1-212ENST00000496458 OPTCQ9UBM4 332 aa3.25□□□□□ -1.89
SF3B1-212ENST00000496458 TP53TG1Q9Y2A0 90 aa3.25□□□□□ -1.89
SF3B1-212ENST00000496458 SZT2Q5T011 3432 aa3.25□□□□□ -1.89
SF3B1-212ENST00000496458 MYH9P35579 1960 aaKnown RBP3.25□□□□□ -1.89
SF3B1-212ENST00000496458 DOCK5Q9H7D0 1870 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 IGLV1-36A0A0B4J1U3 117 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 CLDN24A6NM45 220 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 LINC01619G3V211 115 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 TSTD3H0UI37 97 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 H7C1H1 209 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 K7EP13 123 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 UBDO15205 165 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 GGCTO75223 188 aaKnown RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 CTSLP07711 333 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 CD37P11049 281 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 CYBAP13498 195 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 HIST1H1BP16401 226 aaKnown RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 ME2P23368 584 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 MYL9P24844 172 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 F2RP25116 425 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 DDTP30046 118 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 S100A11P31949 105 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 TGFBR2P37173 567 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 MYCNOSP40205 109 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 RPS9P46781 194 aaKnown RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 CYB561P49447 251 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 RAB5CP51148 216 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 OR4D2P58180 307 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 DCDP81605 110 aaKnown RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 PRPSAP1Q14558 356 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 NEDD8Q15843 81 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 C9orf64Q5T6V5 341 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 SYT6Q5T7P8 510 aaPredicted RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 SAXO2Q658L1 398 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 RFLNAQ6ZTI6 216 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 RASSF6Q6ZTQ3 369 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 SNX29P2Q8IUI4 249 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 ZBTB8OSQ8IWT0 167 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 RIMKLAQ8IXN7 391 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 DEFB107AQ8IZN7 70 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 GAPTQ8N292 157 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 ZFP41Q8N8Y5 198 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 NKAPP1Q8N9T2 125 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 OR51S1Q8NGJ8 323 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 OR9A2Q8NGT5 310 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 NEK7Q8TDX7 302 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 ZNF431Q8TF32 576 aaPredicted RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 TMEM158Q8WZ71 300 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 RDH12Q96NR8 316 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 TEAD3Q99594 435 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 TMEM208Q9BTX3 173 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 NKX6-2Q9C056 277 aaPredicted RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 DCSTAMPQ9H295 470 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 ABCB9Q9NP78 766 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 OR12D3Q9UGF7 316 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 NUFIP1Q9UHK0 495 aaKnown RBP3.24□□□□□ -1.89
SF3B1-212ENST00000496458 BDP1A6H8Y1 2624 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 TRANK1O15050 2925 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 CHD9Q3L8U1 2897 aa3.24□□□□□ -1.89
SF3B1-212ENST00000496458 ZNF236Q9UL36 1845 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 TET1Q8NFU7 2136 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 IGHV3-64DA0A0J9YX35 117 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 EXOC1LA0A1B0GW35 172 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 TCRBV3S1A0A5B6 114 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 PDCD5O14737 125 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 MYL12BO14950 172 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 AZIN1O14977 448 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 AGPAT2O15120 278 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 MOSP00540 346 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 TYMSP04818 313 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 SLC35G6P0C7Q6 338 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 OR56A5P0C7T3 313 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 HIST1H1EP10412 219 aaKnown RBP3.23□□□□□ -1.89
SF3B1-212ENST00000496458 MYL12AP19105 171 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 RPS3P23396 243 aaKnown RBP eCLIP3.23□□□□□ -1.899e-15■■■■■ 29.1
SF3B1-212ENST00000496458 PSMA1P25786 263 aaKnown RBP3.23□□□□□ -1.89
SF3B1-212ENST00000496458 RRAS2P62070 204 aaPredicted RBP3.23□□□□□ -1.89
SF3B1-212ENST00000496458 SELENOTP62341 195 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 FAM53BQ14153 422 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 QPRTQ15274 297 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 TAF1AQ15573 450 aaPredicted RBP3.23□□□□□ -1.89
SF3B1-212ENST00000496458 SLC25A35Q3KQZ1 300 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 C1orf100Q5SVJ3 147 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 LPCAT3Q6P1A2 487 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 ZNF620Q6ZNG0 422 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 ANGPTL5Q86XS5 388 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 SLC30A8Q8IWU4 369 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 LRRC18Q8N456 261 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 ZNF283Q8N7M2 679 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 CHST4Q8NCG5 386 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 OR10J6PQ8NGY7 276 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 OR2V1Q8NHB1 315 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 HAVCR2Q8TDQ0 301 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 PRUNE2Q8WUY3 3088 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 RAB8BQ92930 207 aa3.23□□□□□ -1.89
SF3B1-212ENST00000496458 FAM19A4Q96LR4 140 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms