RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SLC25A38Q96DW6 304 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 PITX2Q99697 317 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 KXD1Q9BQD3 176 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 SELENOIQ9C0D9 397 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 UBE2TQ9NPD8 197 aaPredicted RBP3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ASF1BQ9NVP2 202 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 TAS2R8Q9NYW2 309 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 DNAJC27Q9NZQ0 273 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 NUFIP1Q9UHK0 495 aaKnown RBP3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF257Q9Y2Q1 563 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 KDM5CP41229 1560 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 SLIT3O75094 1523 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 TOPBP1Q92547 1522 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 HECW1Q76N89 1606 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 TRPM1Q7Z4N2 1603 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 A6NDN8 102 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF670-ZNF695F2Z2N8 137 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 FNDC10F2Z333 226 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 LINC01619G3V211 115 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 LY6LH3BQJ8 138 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 J3QQQ9 107 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 J3QT63 122 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 SLC17A2O00624 439 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 WNT9BO14905 357 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 NDUFS7O75251 213 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 TNFSF13O75888 250 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 OR2A4O95047 310 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 SPINK8P0C7L1 97 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 OR9G9P0C7N8 305 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 MED14OSP0DP75 135 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 CD1DP15813 335 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 HIST1H1DP16402 221 aaKnown RBP3.42□□□□□ -1.86
BRCA1-220ENST00000492859 PSMB9P28065 219 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 LPAR6P43657 344 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 PPICP45877 212 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ATP5G3P48201 142 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 SELENOPP49908 381 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 RND2P52198 227 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 DIO3P55073 304 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 H2BFSP57053 126 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 TPPP2P59282 170 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 HBG1P69891 147 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 HBG2P69892 147 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 MYL5Q02045 173 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 CATR1Q13166 79 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ARFRP1Q13795 201 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 C1DQ13901 141 aaKnown RBP3.42□□□□□ -1.86
BRCA1-220ENST00000492859 MIDNQ504T8 468 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 SPANXN3Q5MJ09 141 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF773Q6PK81 442 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 UNQ5815/PRO19632Q6UWF5 114 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 PRIMA1Q86XR5 153 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 LINC00301Q8NCQ3 95 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 OR2A1Q8NGT9 310 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 OR52N5Q8NH56 324 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 OR2T6Q8NHC8 308 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 PHLDA1Q8WV24 401 aaPredicted RBP3.42□□□□□ -1.86
BRCA1-220ENST00000492859 FAM19A4Q96LR4 140 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 OR2A7Q96R45 310 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF300Q96RE9 604 aaPredicted RBP3.42□□□□□ -1.86
BRCA1-220ENST00000492859 LINC01587Q99440 93 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 SDF2Q99470 211 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 MED28Q9H204 178 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 Q9HAA7 133 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 PDFQ9HBH1 243 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 KCNIP2Q9NS61 270 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 BET1LQ9NYM9 111 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF226Q9NYT6 803 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 KCNIP1Q9NZI2 227 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 PROCRQ9UNN8 238 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 KIF13AQ9H1H9 1805 aa3.42□□□□□ -1.86
BRCA1-220ENST00000492859 DIP2AQ14689 1571 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 CASKIN1Q8WXD9 1431 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 MROH1Q8NDA8 1641 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 RLFQ13129 1914 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 FANCMQ8IYD8 2048 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 NUP205Q92621 2012 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TRAV8-4A0A0B4J246 113 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 A0A0B4J2A0 478 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 IGHV1-69-2A0A0G2JMI3 117 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SMIM35A0A1B0GVV1 85 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 A0A1B0GWB2 263 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 A0A1B0GXF2 115 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 GGT3PA6NGU5 568 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 FAM183AA6NL82 134 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 GGTLC3B5MD39 225 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SMIM22K7EJ46 135 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 CDX4O14627 284 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 NGFP01138 241 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 SLC35G6P0C7Q6 338 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 CCL1P22362 96 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 TAF6P49848 677 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF140P52738 457 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 LOXL1Q08397 574 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 DAZ2Q13117 558 aaKnown RBP3.41□□□□□ -1.86
BRCA1-220ENST00000492859 ZNF146Q15072 292 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 CTF1Q16619 201 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 ECSCRQ19T08 205 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 GSG1Q2KHT4 349 aa3.41□□□□□ -1.86
BRCA1-220ENST00000492859 BEAN1Q3B7T3 259 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms