RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 IGSF23A1L1A6 192 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 NKX2-6A6NCS4 301 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF705FA8MVS1 300 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RNASEK-C17orf49H0YIS7 233 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 K7EM74 188 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 FAAHO00519 579 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RFXANKO14593 260 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HSD17B6O14756 317 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CASKO14936 926 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RAB29O14966 203 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 XRCC2O43543 280 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HCRTR1O43613 425 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 EIF4E2O60573 245 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BKO60814 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SC5DO75845 299 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 S1PR2O95136 353 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CD160O95971 181 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SEMG1P04279 462 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BJP06899 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SERPINE2P07093 398 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GIPP09681 153 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR5AC1P0C628 307 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF705DP0CH99 300 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF705BP0CI00 300 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PGA3P0DJD8 388 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SMIM10L1P0DMW3 83 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR5H8P0DN80 308 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR12D1P0DN82 309 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CD79AP11912 226 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 FOLR1P15328 257 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BOP23527 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ACP1P24666 158 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HTR2CP28335 458 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ADORA2BP29275 332 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BBP33778 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR1D2P34982 312 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RPL4P36578 427 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MDH2P40926 338 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GABRA2P47869 451 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GABRA4P48169 554 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 POLR2HP52434 150 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CRISP3P54108 245 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CLDN12P56749 244 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RAB38P57729 211 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR10A3P58181 314 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BDP58876 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TAS2R43P59537 309 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PLP1P60201 277 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TBPL1P62380 186 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RPL23AP62750 156 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST1H2BCP62807 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 EIF5AP63241 154 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SLC35A2P78381 396 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 FABP5Q01469 135 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ACVR1Q04771 509 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR2F1Q13607 317 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ZNF266Q14584 549 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PTGES3Q15185 160 aaKnown RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MMDQ15546 238 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 NSDHLQ15738 373 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 UBE2V2Q15819 145 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TNXAQ16473 311 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MAPK14Q16539 360 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST2H2BEQ16778 126 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 IQCJQ1A5X6 159 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM241Q24JQ0 296 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 C17orf58Q2M2W7 97 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 PGGHGQ32M88 737 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ACSM3Q53FZ2 586 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 XKR7Q5GH72 579 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GCSAMLQ5JQS6 135 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CTSL3PQ5NE16 218 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CPTPQ5TA50 214 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 C9orf135Q5VTT2 229 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 WDR25Q64LD2 544 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GLT8D1Q68CQ7 371 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM225Q6GV28 225 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 C22orf42Q6IC83 251 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 LCN8Q6JVE9 175 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 WDR74Q6RFH5 385 aaPredicted RBP1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ALKAL1Q6UXT8 129 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CLEC20AQ6ZU45 233 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 MBOAT2Q6ZWT7 520 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OLIG3Q7RTU3 272 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 NIT1Q86X76 327 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 RIMKLAQ8IXN7 391 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 LGI3Q8N145 548 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 BATF2Q8N1L9 274 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 SPICQ8N5J4 248 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 TMEM251Q8N6I4 163 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CSNK1A1LQ8N752 337 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 BCORP1Q8N888 145 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 CDRT4Q8N9R6 151 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 C5orf17Q8NAS9 161 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 GPR26Q8NDV2 337 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 FBXO36Q8NEA4 188 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 ATP6V1C2Q8NEY4 427 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR4F6Q8NGB9 312 aa1.58□□□□□ -2.16
HMGB1-208ENST00000490788 OR52B4Q8NGK2 314 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms