RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 ETV3LQ6ZN32 361 aa16.61■□□□□ 0.25
LIME1-207ENST00000489212 LCNL1Q6ZST4 164 aa16.61■□□□□ 0.25
LIME1-207ENST00000489212 COMMD1Q8N668 190 aa16.61■□□□□ 0.25
LIME1-207ENST00000489212 TSPAN14Q8NG11 270 aa16.61■□□□□ 0.25
LIME1-207ENST00000489212 OR5H6Q8NGV6 325 aa16.61■□□□□ 0.25
LIME1-207ENST00000489212 IGHV7-81A0A0B4J1V7 117 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 HLA-DRB1P01911 266 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 PF4P02776 101 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 IGF1P05019 195 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 TGFBR1P36897 503 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 TEX38Q6PEX7 206 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 Q6ZS49 121 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 ZNF383Q8NA42 475 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 ZFP57Q9NU63 452 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 ZNF221Q9UK13 617 aa16.6■□□□□ 0.25
LIME1-207ENST00000489212 A0A087WXM4 84 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 TMEM235A6NFC5 223 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 RRP9O43818 475 aaKnown RBP16.59■□□□□ 0.25
LIME1-207ENST00000489212 TNFAIP8O95379 198 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 DIRAS3O95661 229 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 RPLP1P05386 114 aaKnown RBP16.59■□□□□ 0.25
LIME1-207ENST00000489212 CD33P20138 364 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 MC5RP33032 325 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 TALDO1P37837 337 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 ARL6IP1Q15041 203 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 SRSF7Q16629 238 aaKnown RBP eCLIP16.59■□□□□ 0.25
LIME1-207ENST00000489212 IDNKQ5T6J7 187 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 HACD4Q5VWC8 232 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 C8orf86Q6ZUL3 223 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 OR10J5Q8NHC4 309 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 NUDCD2Q8WVJ2 157 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 SLC25A38Q96DW6 304 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 YIPF6Q96EC8 236 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 C5orf30Q96GV9 206 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 RHBDL2Q9NX52 303 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 ZNF580Q9UK33 172 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 WASHC3Q9Y3C0 194 aa16.59■□□□□ 0.25
LIME1-207ENST00000489212 H7C2Y5 167 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 PRB2P02812 416 aaPredicted RBP16.58■□□□□ 0.24
LIME1-207ENST00000489212 OR8U9P0C7N5 309 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 IGLL1P15814 213 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 VDAC1P21796 283 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 DTYMKP23919 212 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 ZNF260Q3ZCT1 412 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 LIN54Q6MZP7 749 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 RNF152Q8N8N0 203 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 OR8U1Q8NH10 309 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 GON7Q9BXV9 100 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 OR51J1Q9H342 316 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 FBXL15Q9H469 300 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 KIAA1456Q9P272 454 aa16.58■□□□□ 0.24
LIME1-207ENST00000489212 G3V318 75 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 M0R1X1 148 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 RRHO14718 337 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 ATP6V0E1O15342 81 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 IGHG4P01861 327 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 IGKV1-16P04430 117 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 TFAP2AP05549 437 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 NDPQ00604 133 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 FOXE3Q13461 319 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 LINC00482Q8N8I6 264 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.57■□□□□ 0.24
LIME1-207ENST00000489212 KLHL30-AS1Q8NEE0 82 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 OR2D2Q9H210 308 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 PARP11Q9NR21 331 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 SDHAF2Q9NX18 166 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 WSB1Q9Y6I7 421 aa16.57■□□□□ 0.24
LIME1-207ENST00000489212 NUDT19A8MXV4 375 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 FCN1O00602 326 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 SSX5O60225 188 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 RBBP9O75884 186 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 SCGNO76038 276 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 ELANEP08246 267 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 GSTP1P09211 210 aaKnown RBP16.56■□□□□ 0.24
LIME1-207ENST00000489212 THBS3P49746 956 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 CXorf66Q5JRM2 361 aaPredicted RBP16.56■□□□□ 0.24
LIME1-207ENST00000489212 ZNF695Q8IW36 515 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 MRPL41Q8IXM3 137 aaKnown RBP16.56■□□□□ 0.24
LIME1-207ENST00000489212 H1FOOQ8IZA3 346 aaPredicted RBP16.56■□□□□ 0.24
LIME1-207ENST00000489212 GINS4Q9BRT9 223 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 ST6GALNAC5Q9BVH7 336 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 GAB2Q9UQC2 676 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 ETV7Q9Y603 341 aa16.56■□□□□ 0.24
LIME1-207ENST00000489212 TRIM64CA6NLI5 447 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 AIREO43918 545 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 PSMB8P28062 276 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 PPIFP30405 207 aaKnown RBP16.55■□□□□ 0.24
LIME1-207ENST00000489212 SCAND1P57086 179 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 TIMM50Q3ZCQ8 353 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 DUX3Q96PT4 197 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 RNF5Q99942 180 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 DCSTAMPQ9H295 470 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 FBXO7Q9Y3I1 522 aa16.55■□□□□ 0.24
LIME1-207ENST00000489212 SLC6A1P30531 599 aa16.54■□□□□ 0.24
LIME1-207ENST00000489212 LSM3P62310 102 aaKnown RBP16.54■□□□□ 0.24
LIME1-207ENST00000489212 PSG5Q15238 335 aa16.54■□□□□ 0.24
LIME1-207ENST00000489212 P2RX4Q99571 388 aa16.54■□□□□ 0.24
LIME1-207ENST00000489212 VCX3AQ9NNX9 186 aa16.54■□□□□ 0.24
LIME1-207ENST00000489212 OR5H8P0DN80 308 aa16.53■□□□□ 0.24
LIME1-207ENST00000489212 CDX1P47902 265 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms