RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CFHR3Q02985 330 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 KIR2DS1Q14954 304 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 ETV3LQ6ZN32 361 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 FOXRED2Q8IWF2 684 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 NPBQ8NG41 125 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 OR4F17Q8NGA8 305 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 OR5AN1Q8NGI8 311 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 OR10J5Q8NHC4 309 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 OR4F4Q96R69 305 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 OR2D2Q9H210 308 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 FBXL15Q9H469 300 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 FBXO7Q9Y3I1 522 aa10.92□□□□□ -0.66
SYNE1-226ENST00000488376 NOTCH1P46531 2555 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 TRAV18A0A075B6X5 111 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 IGHV7-81A0A0B4J1V7 117 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 G3V318 75 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 M0R1X1 148 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 FCN1O00602 326 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 NDUFA3O95167 84 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 PRB2P02812 416 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-226ENST00000488376 RPLP1P05386 114 aaKnown RBP10.91□□□□□ -0.66
SYNE1-226ENST00000488376 FCER2P06734 321 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 DTYMKP23919 212 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 NCS1P62166 190 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 RPL23AP62750 156 aaKnown RBP10.91□□□□□ -0.66
SYNE1-226ENST00000488376 C5orf64Q2M2E5 130 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 OXLD1Q5BKU9 147 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 SAMD5Q5TGI4 173 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 Q6ZS49 121 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 H1FOOQ8IZA3 346 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-226ENST00000488376 PHF21AQ96BD5 680 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 FUNDC2Q9BWH2 189 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 NAA50Q9GZZ1 169 aaKnown RBP10.91□□□□□ -0.66
SYNE1-226ENST00000488376 SDHAF2Q9NX18 166 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 ZNF221Q9UK13 617 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 WASHC3Q9Y3C0 194 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 ETV7Q9Y603 341 aa10.91□□□□□ -0.66
SYNE1-226ENST00000488376 OR5H14A6NHG9 310 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 H7C2Y5 167 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 J3QRK9 145 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 ATP6V0E1O15342 81 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 HLA-DRB1P01911 266 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 GSTP1P09211 210 aaKnown RBP10.9□□□□□ -0.66
SYNE1-226ENST00000488376 SERPINB10P48595 397 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 VBP1P61758 197 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 SRSF7Q16629 238 aaKnown RBP eCLIP10.9□□□□□ -0.66
SYNE1-226ENST00000488376 BEAN1Q3B7T3 259 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 TIMM50Q3ZCQ8 353 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 GVQW1Q8N7I0 195 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 OR13F1Q8NGS4 319 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 DUX3Q96PT4 197 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 GINS4Q9BRT9 223 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 VCX3AQ9NNX9 186 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 PARP11Q9NR21 331 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 TPSG1Q9NRR2 321 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 GAB2Q9UQC2 676 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 WSB1Q9Y6I7 421 aa10.9□□□□□ -0.66
SYNE1-226ENST00000488376 IGKV1D-13A0A0B4J2D9 117 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 RRHO14718 337 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 IGF1P05019 195 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 TFAP2AP05549 437 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 IGKV1-13P0DP09 117 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 PF4V1P10720 104 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 NFYAP23511 347 aaPredicted RBP10.89□□□□□ -0.67
SYNE1-226ENST00000488376 SCAND1P57086 179 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 GNG2P59768 71 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 PNLIPRP3Q17RR3 467 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 LIN54Q6MZP7 749 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 C8orf86Q6ZUL3 223 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 CLCC1Q96S66 551 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 OR51J1Q9H342 316 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 SPATA2Q9UM82 520 aa10.89□□□□□ -0.67
SYNE1-226ENST00000488376 MEIS3P1A6NDR6 274 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 DIRAS3O95661 229 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 EGR2P11161 476 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-226ENST00000488376 IGLL1P15814 213 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 MC5RP33032 325 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 SLC35B1P78383 322 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 ARL6IP1Q15041 203 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 PSG5Q15238 335 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 DEFB136Q30KP8 78 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 TEX38Q6PEX7 206 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.88□□□□□ -0.67
SYNE1-226ENST00000488376 KLHL30-AS1Q8NEE0 82 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 KLK15Q9H2R5 256 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 GHITMQ9H3K2 345 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 AUNIPQ9H7T9 357 aa10.88□□□□□ -0.67
SYNE1-226ENST00000488376 LINC00473A8K010 186 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 NUDT19A8MXV4 375 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 SCGNO76038 276 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 IGLV2-14P01704 120 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 IGLV2-23P01705 113 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 IGHG4P01861 327 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 PF4P02776 101 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 VDAC1P21796 283 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 PPIFP30405 207 aaKnown RBP10.87□□□□□ -0.67
SYNE1-226ENST00000488376 CX3CL1P78423 397 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 FOXE3Q13461 319 aa10.87□□□□□ -0.67
SYNE1-226ENST00000488376 PDLIM3Q53GG5 364 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-226ENST00000488376 C19orf54Q5BKX5 351 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms