RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 C2orf76Q3KRA6 126 aa17.57■□□□□ 0.4
PTPN4-211ENST00000488279 OR56B1Q8NGI3 324 aa17.57■□□□□ 0.4
PTPN4-211ENST00000488279 OR5AN1Q8NGI8 311 aa17.57■□□□□ 0.4
PTPN4-211ENST00000488279 PTX4Q96A99 478 aa17.57■□□□□ 0.4
PTPN4-211ENST00000488279 FAM3DQ96BQ1 224 aa17.57■□□□□ 0.4
PTPN4-211ENST00000488279 CMSS1Q9BQ75 279 aaKnown RBP17.57■□□□□ 0.4
PTPN4-211ENST00000488279 PECRQ9BY49 303 aa17.57■□□□□ 0.4
PTPN4-211ENST00000488279 ACOT13Q9NPJ3 140 aa17.57■□□□□ 0.4
PTPN4-211ENST00000488279 CLDN12P56749 244 aa17.56■□□□□ 0.4
PTPN4-211ENST00000488279 FABP5Q01469 135 aa17.56■□□□□ 0.4
PTPN4-211ENST00000488279 TMEM267Q0VDI3 215 aaPredicted RBP17.56■□□□□ 0.4
PTPN4-211ENST00000488279 PRR25Q96S07 402 aa17.56■□□□□ 0.4
PTPN4-211ENST00000488279 ZNF221Q9UK13 617 aa17.56■□□□□ 0.4
PTPN4-211ENST00000488279 RNF150Q9ULK6 438 aa17.56■□□□□ 0.4
PTPN4-211ENST00000488279 FOXA2Q9Y261 457 aaPredicted RBP17.56■□□□□ 0.4
PTPN4-211ENST00000488279 V9GY05 133 aa17.56■□□□□ 0.4
PTPN4-211ENST00000488279 A0A1W2PN81 502 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 FCN1O00602 326 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 DENRO43583 198 aaKnown RBP17.55■□□□□ 0.4
PTPN4-211ENST00000488279 CHRNA7P36544 502 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 MAP2K4P45985 399 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 INSL3P51460 131 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 GNB1P62873 340 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 NDPQ00604 133 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 TCTEX1D1Q8N7M0 179 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 ABHD5Q8WTS1 349 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 VCX3BQ9H321 246 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.55■□□□□ 0.4
PTPN4-211ENST00000488279 FBXO7Q9Y3I1 522 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 LSM4Q9Y4Z0 139 aaKnown RBP17.55■□□□□ 0.4
PTPN4-211ENST00000488279 A3GALT2U3KPV4 340 aa17.55■□□□□ 0.4
PTPN4-211ENST00000488279 TRDCB7Z8K6 153 aa17.54■□□□□ 0.4
PTPN4-211ENST00000488279 NHLRC4P0CG21 123 aaPredicted RBP17.54■□□□□ 0.4
PTPN4-211ENST00000488279 CRIP2P52943 208 aaPredicted RBP17.54■□□□□ 0.4
PTPN4-211ENST00000488279 MRPS15P82914 257 aaKnown RBP17.54■□□□□ 0.4
PTPN4-211ENST00000488279 C19orf54Q5BKX5 351 aa17.54■□□□□ 0.4
PTPN4-211ENST00000488279 PLAC9Q5JTB6 97 aa17.54■□□□□ 0.4
PTPN4-211ENST00000488279 DRAXINQ8NBI3 349 aaPredicted RBP17.54■□□□□ 0.4
PTPN4-211ENST00000488279 RAB22AQ9UL26 194 aa17.54■□□□□ 0.4
PTPN4-211ENST00000488279 NUBP2Q9Y5Y2 271 aa17.54■□□□□ 0.4
PTPN4-211ENST00000488279 SOX15O60248 233 aa17.53■□□□□ 0.4
PTPN4-211ENST00000488279 ASPHD1Q5U4P2 390 aa17.53■□□□□ 0.4
PTPN4-211ENST00000488279 CLCC1Q96S66 551 aa17.53■□□□□ 0.4
PTPN4-211ENST00000488279 METTL1Q9UBP6 276 aaKnown RBP17.53■□□□□ 0.4
PTPN4-211ENST00000488279 ZNF256Q9Y2P7 627 aaPredicted RBP17.53■□□□□ 0.4
PTPN4-211ENST00000488279 IGKV1-6A0A0C4DH72 117 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 TMEM272A0A1B0GTI8 110 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 LDLRAD4O15165 306 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 PROP1O75360 226 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 EGR2P11161 476 aaPredicted RBP17.52■□□□□ 0.4
PTPN4-211ENST00000488279 SERPINB10P48595 397 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 PSG5Q15238 335 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 AKIRIN2Q53H80 203 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 HES5Q5TA89 166 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 PYHIN1Q6K0P9 492 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 CD200R1LQ6Q8B3 271 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 ZNF562Q6V9R5 426 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 ZNF429Q86V71 674 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 PPP1R27Q86WC6 154 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 DCUN1D4Q92564 292 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 WWC2-AS2Q96NR7 200 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 TSNAXQ99598 290 aaKnown RBP17.52■□□□□ 0.4
PTPN4-211ENST00000488279 RDH8Q9NYR8 311 aa17.52■□□□□ 0.4
PTPN4-211ENST00000488279 TENM3Q9P273 2699 aa17.52■□□□□ 0.39
PTPN4-211ENST00000488279 OVOL1O14753 267 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 TFAP2AP05549 437 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 CD3GP09693 182 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 CD40LGP29965 261 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 RPS16P62249 146 aaKnown RBP17.51■□□□□ 0.39
PTPN4-211ENST00000488279 ACTBL2Q562R1 376 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 ZNF383Q8NA42 475 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 OR4A4PQ8NGN8 299 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 CASTOR1Q8WTX7 329 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 RAB3CQ96E17 227 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 TOLLIPQ9H0E2 274 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 ALX4Q9H161 411 aaPredicted RBP17.51■□□□□ 0.39
PTPN4-211ENST00000488279 GAB2Q9UQC2 676 aa17.51■□□□□ 0.39
PTPN4-211ENST00000488279 PDCD5O14737 125 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 APOA2P02652 100 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 IGKV1-16P04430 117 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 HSPA13P48723 471 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 LINC00205P59089 165 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 TBCEQ15813 527 aaPredicted RBP17.5■□□□□ 0.39
PTPN4-211ENST00000488279 UNQ5815/PRO19632Q6UWF5 114 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 ZNF367Q7RTV3 350 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 PDPNQ86YL7 162 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 FLYWCH2Q96CP2 140 aaKnown RBP17.5■□□□□ 0.39
PTPN4-211ENST00000488279 FAM103A1Q9BTL3 118 aaKnown RBP17.5■□□□□ 0.39
PTPN4-211ENST00000488279 BLOC1S6Q9UL45 172 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 KCNK7Q9Y2U2 307 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 NBEAL2Q6ZNJ1 2754 aa17.5■□□□□ 0.39
PTPN4-211ENST00000488279 TRAV1-2A0A0B4J238 106 aa17.49■□□□□ 0.39
PTPN4-211ENST00000488279 ERICH4A6NGS2 130 aa17.49■□□□□ 0.39
PTPN4-211ENST00000488279 LINC01619G3V211 115 aa17.49■□□□□ 0.39
PTPN4-211ENST00000488279 FABP7O15540 132 aa17.49■□□□□ 0.39
PTPN4-211ENST00000488279 SPDEFO95238 335 aa17.49■□□□□ 0.39
PTPN4-211ENST00000488279 CA2P00918 260 aa17.49■□□□□ 0.39
PTPN4-211ENST00000488279 LGALS1P09382 135 aaKnown RBP17.49■□□□□ 0.39
PTPN4-211ENST00000488279 PLA2G7Q13093 441 aa17.49■□□□□ 0.39
PTPN4-211ENST00000488279 IZUMO2Q6UXV1 221 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms