RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 RNF150Q9ULK6 438 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 PRELID3BQ9Y3B1 194 aa6.46□□□□□ -1.38
USP40-216ENST00000485943 MXRA5Q9NR99 2828 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 ATRQ13535 2644 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 SAA2-SAA4A0A096LPE2 208 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 RAB27BO00194 218 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 MFNGO00587 321 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 LDLRAD4O15165 306 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TUSC2O75896 110 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TSPAN9O75954 239 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 SLC22A5O76082 557 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 ACTL6BO94805 426 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OPN1MWP04001 364 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TFAP2AP05549 437 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OR8U9P0C7N5 309 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 GSTT2P0CG29 244 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 GSTT2BP0CG30 244 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 SAA2P0DJI9 122 aaPredicted RBP6.45□□□□□ -1.38
USP40-216ENST00000485943 OPN1MW2P0DN77 364 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OPN1MW3P0DN78 364 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 CGB3P0DN86 165 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 CGB7P0DN87 165 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 PF4V1P10720 104 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 VDAC1P21796 283 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 S100A5P33763 92 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 PRSS3P35030 304 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TGFBR1P36897 503 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 COMPP49747 757 aaPredicted RBP6.45□□□□□ -1.38
USP40-216ENST00000485943 LOXL3P58215 753 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TAS2R46P59540 309 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 CT45A1Q5HYN5 189 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 PLAC9Q5JTB6 97 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 FAM71F2Q6NXP2 309 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 CNIH2Q6PI25 160 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 SLC35E3Q7Z769 313 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TMEM17Q86X19 198 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 C11orf44Q8N8P7 122 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 POC5Q8NA72 575 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OR8H1Q8NGG4 311 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OR5H6Q8NGV6 325 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OR5H2Q8NGV7 314 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OR8U1Q8NH10 309 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 CT45A3Q8NHU0 189 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 LINC01006Q8NI28 216 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TAF15Q92804 592 aaKnown RBP eCLIP6.45□□□□□ -1.38
USP40-216ENST00000485943 AJUBAQ96IF1 538 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 ABHD14BQ96IU4 210 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 ADTRPQ96IZ2 230 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 OR1A1Q9P1Q5 309 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 WASHC3Q9Y3C0 194 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 MMP24Q9Y5R2 645 aa6.45□□□□□ -1.38
USP40-216ENST00000485943 TET2Q6N021 2002 aaPredicted RBP6.45□□□□□ -1.38
USP40-216ENST00000485943 A0A1W2PPI3 338 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 MEIS3P1A6NDR6 274 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 OR5H14A6NHG9 310 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 NUDT19A8MXV4 375 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 ZNF561-AS1K7EIQ3 104 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 SLC31A2O15432 143 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 FGF16O43320 207 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 XRCC3O43542 346 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 CREBL2O60519 120 aaPredicted RBP6.44□□□□□ -1.38
USP40-216ENST00000485943 GABARAPO95166 117 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 CNIH1O95406 144 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 APOA1P02647 267 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 CSF1P09603 554 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 SMIM18P0DKX4 95 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 RRASP10301 218 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 CD37P11049 281 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 INPP1P49441 399 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 THBS3P49746 956 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 TMBIM6P55061 237 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 TAS2R20P59543 309 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 FXYD4P59646 89 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 PLA2G7Q13093 441 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 CATR1Q13166 79 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 IL18Q14116 193 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 HERPUD1Q15011 391 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 NSUN5P1Q3KNT7 163 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 IGSF11Q5DX21 431 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 RNASE12Q5GAN4 147 aaKnown RBP6.44□□□□□ -1.38
USP40-216ENST00000485943 TMEM65Q6PI78 240 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 FAM131AQ6UXB0 335 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 NR2C2APQ86WQ0 139 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 GAPTQ8N292 157 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.44□□□□□ -1.38
USP40-216ENST00000485943 FLYWCH2Q96CP2 140 aaKnown RBP6.44□□□□□ -1.38
USP40-216ENST00000485943 CMTM3Q96MX0 182 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 TSNAXQ99598 290 aaKnown RBP6.44□□□□□ -1.38
USP40-216ENST00000485943 PHB2Q99623 299 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 BCL7BQ9BQE9 202 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 MRPL20Q9BYC9 149 aaKnown RBP6.44□□□□□ -1.38
USP40-216ENST00000485943 C11orf54Q9H0W9 315 aaPredicted RBP6.44□□□□□ -1.38
USP40-216ENST00000485943 C16orf95Q9H693 158 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 SLC35D1Q9NTN3 355 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 C19orf73Q9NVV2 129 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 EHFQ9NZC4 300 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 EXTL2Q9UBQ6 330 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 ANXA10Q9UJ72 324 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 X6R8D5 127 aa6.44□□□□□ -1.38
USP40-216ENST00000485943 SVEP1Q4LDE5 3571 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms