RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 ATAD5Q96QE3 1844 aa2.55□□□□□ -2
VPS13A-211ENST00000484581 OR52B2Q96RD2 323 aa2.55□□□□□ -2
VPS13A-211ENST00000484581 CCDC94Q9BW85 323 aaPredicted RBP2.55□□□□□ -2
VPS13A-211ENST00000484581 C1QTNF6Q9BXI9 259 aa2.55□□□□□ -2
VPS13A-211ENST00000484581 SLC2A9Q9NRM0 540 aa2.55□□□□□ -2
VPS13A-211ENST00000484581 SLC23A2Q9UGH3 650 aa2.55□□□□□ -2
VPS13A-211ENST00000484581 TGIF2-C20orf24A0A0A6YYL0 155 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 KPNA3O00505 521 aaPredicted RBP2.54□□□□□ -2
VPS13A-211ENST00000484581 LECT2O14960 151 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 MT-CO2P00403 227 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 TNNC2P02585 160 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 OPN1SWP03999 348 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 NEFHP12036 1026 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 UCHL3P15374 230 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 CTLA4P16410 223 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 KLF3P57682 345 aaPredicted RBP2.54□□□□□ -2
VPS13A-211ENST00000484581 BASP1P80723 227 aaKnown RBP2.54□□□□□ -2
VPS13A-211ENST00000484581 TSPAN31Q12999 210 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 APOFQ13790 326 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 LGALSLQ3ZCW2 172 aaPredicted RBP2.54□□□□□ -2
VPS13A-211ENST00000484581 ZNF550Q7Z398 422 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 ZNF680Q8NEM1 530 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 ZNF721Q8TF20 911 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 OR5P3Q8WZ94 311 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 MS4A6EQ96DS6 147 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 RSPO3Q9BXY4 272 aaPredicted RBP2.54□□□□□ -2
VPS13A-211ENST00000484581 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.54□□□□□ -2
VPS13A-211ENST00000484581 EMC3Q9P0I2 261 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 ZNF443Q9Y2A4 671 aaPredicted RBP2.54□□□□□ -2
VPS13A-211ENST00000484581 OTOFQ9HC10 1997 aa2.54□□□□□ -2
VPS13A-211ENST00000484581 CACNA1DQ01668 2161 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 KIF15Q9NS87 1388 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 CHD5Q8TDI0 1954 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 LINC00862A6NCI5 91 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 KRT75O95678 551 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 CD7P09564 240 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 PRPS1L1P21108 318 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 DAPP51397 102 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 ERVS71-1P61550 626 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 DHRS2Q13268 280 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 LY6EQ16553 131 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 KRTAP13-2Q52LG2 175 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 PYCR3Q53H96 274 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 C1orf194Q5T5A4 169 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 SBSNQ6UWP8 590 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 HIST2H3AQ71DI3 136 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 UBL4BQ8N7F7 174 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 CD200R1Q8TD46 325 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 ANKRD7Q92527 254 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 CPNE2Q96FN4 548 aaPredicted RBP2.53□□□□□ -2
VPS13A-211ENST00000484581 TBX5Q99593 518 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 TMEM109Q9BVC6 243 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 FKBP14Q9NWM8 211 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 TAS2R1Q9NYW7 299 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 VPS29Q9UBQ0 182 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 MARCOQ9UEW3 520 aaPredicted RBP2.53□□□□□ -2
VPS13A-211ENST00000484581 SEC16AO15027 2179 aa2.53□□□□□ -2
VPS13A-211ENST00000484581 PLCH2O75038 1416 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 NLRC5Q86WI3 1866 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 IGKV1D-37A0A075B6S9 117 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 DISC1C4P0D8 188 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 M0R381 172 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 GSTZ1O43708 216 aaPredicted RBP2.52□□□□□ -2.01
VPS13A-211ENST00000484581 SLC25A20O43772 301 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 OR5G3P0C626 314 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 IGHV3-30-3P0DP02 117 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 ALOX5APP20292 161 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 CRABP1P29762 137 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 MARCKSL1P49006 195 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 FOXA1P55317 472 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 TMEM33P57088 247 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 RPS11P62280 158 aaKnown RBP eCLIP2.52□□□□□ -2.01
VPS13A-211ENST00000484581 RANP62826 216 aaKnown RBP2.52□□□□□ -2.01
VPS13A-211ENST00000484581 FLI1Q01543 452 aaPredicted RBP2.52□□□□□ -2.01
VPS13A-211ENST00000484581 SRSF6Q13247 344 aaKnown RBP2.52□□□□□ -2.01
VPS13A-211ENST00000484581 PLPPR5Q32ZL2 321 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 HIST2H3PS2Q5TEC6 136 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 LY6G5BQ8NDX9 201 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 C1orf64Q8NEQ6 169 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 CDC26Q8NHZ8 85 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 NKX6-2Q9C056 277 aaPredicted RBP2.52□□□□□ -2.01
VPS13A-211ENST00000484581 HHLA2Q9UM44 414 aa2.52□□□□□ -2.01
VPS13A-211ENST00000484581 ZFYVE9O95405 1425 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 TMED7-TICAM2A0A0A6YYA0 188 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 CLDN24A6NM45 220 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 C15orf65H3BRN8 121 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 ZNF14P17017 642 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-211ENST00000484581 HSD11B1P28845 292 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 S100A5P33763 92 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 HOXC5Q00444 222 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 PRDX4Q13162 271 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 C1orf174Q8IYL3 243 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 LRRC25Q8N386 305 aaPredicted RBP2.51□□□□□ -2.01
VPS13A-211ENST00000484581 TMEM86BQ8N661 226 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 CLDN22Q8N7P3 220 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 OR2D3Q8NGH3 330 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 SLC35B4Q969S0 331 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 DIRAS2Q96HU8 199 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 PECRQ9BY49 303 aa2.51□□□□□ -2.01
VPS13A-211ENST00000484581 CARHSP1Q9Y2V2 147 aaKnown RBP2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms