RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 ZNF841Q6ZN19 808 aa11.56□□□□□ -0.56
CLK3-204ENST00000483723 FAM219AQ8IW50 185 aa11.56□□□□□ -0.56
CLK3-204ENST00000483723 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.56□□□□□ -0.56
CLK3-204ENST00000483723 GAL3ST2Q9H3Q3 398 aa11.56□□□□□ -0.56
CLK3-204ENST00000483723 PLEKHA2Q9HB19 425 aa11.56□□□□□ -0.56
CLK3-204ENST00000483723 NSG2Q9Y328 171 aa11.56□□□□□ -0.56
CLK3-204ENST00000483723 LSM5Q9Y4Y9 91 aaKnown RBP11.56□□□□□ -0.56
CLK3-204ENST00000483723 ABCA4P78363 2273 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 LINC00473A8K010 186 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 C17orf98A8MV24 154 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 KIAA1324LA8MWY0 1029 aaPredicted RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 P0C879 139 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 NUP62P37198 522 aaPredicted RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 NKX2-1P43699 371 aaPredicted RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 THOC7Q6I9Y2 204 aaKnown RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 Q6ZRM9 215 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 ODF3L1Q8IXM7 274 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 ZNF714Q96N38 554 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 ARPC5LQ9BPX5 153 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 ZNF251Q9BRH9 671 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 ABHD14AQ9BUJ0 271 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 TRBV23-1A0A0A0MS06 115 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 GPR37O15354 613 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 ATP6V1G1O75348 118 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 MMP9P14780 707 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 DAOP14920 347 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 TMEM155Q4W5P6 130 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 CXorf66Q5JRM2 361 aaPredicted RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 NCR3LG1Q68D85 454 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 BTNL3Q6UXE8 466 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 C1orf229Q6ZS94 237 aaPredicted RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 SLC25A48Q6ZT89 311 aaKnown RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 FOXRED2Q8IWF2 684 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 SPAG16Q8N0X2 631 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 CYTL1Q9NRR1 136 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 UBQLN2Q9UHD9 624 aa11.55□□□□□ -0.56
CLK3-204ENST00000483723 RCL1Q9Y2P8 373 aaKnown RBP11.55□□□□□ -0.56
CLK3-204ENST00000483723 KALRNO60229 2985 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 RAMP3O60896 148 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 SCGB1D2O95969 90 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 CCL3L1P16619 93 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 RPL12P30050 165 aaKnown RBP11.54□□□□□ -0.56
CLK3-204ENST00000483723 P2RY1P47900 373 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 UBA52P62987 128 aaKnown RBP11.54□□□□□ -0.56
CLK3-204ENST00000483723 PRAMEF5Q5TYX0 476 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 GPR157Q5UAW9 335 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 ZNF596Q8TC21 504 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 CD300LFQ8TDQ1 290 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 TCTEX1D2Q8WW35 142 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 LEAP2Q969E1 77 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 COA4Q9NYJ1 87 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 MIOXQ9UGB7 285 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 LAMP3Q9UQV4 416 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 MMP24Q9Y5R2 645 aa11.54□□□□□ -0.56
CLK3-204ENST00000483723 YLPM1P49750 1951 aaKnown RBP11.53□□□□□ -0.56
CLK3-204ENST00000483723 RAB29O14966 203 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 RBFOX2O43251 390 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLK3-204ENST00000483723 NFYBP25208 207 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 HTR2BP41595 481 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 TMEM33P57088 247 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 LINC00205P59089 165 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 SLC7A5P1Q8MH63 180 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 C11orf42Q8N5U0 333 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 C8orf31Q8N9H6 132 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 STOML3Q8TAV4 291 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 ST8SIA2Q92186 375 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 DDB2Q92466 427 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 H1FXQ92522 213 aaKnown RBP11.53□□□□□ -0.56
CLK3-204ENST00000483723 RAB1CQ92928 201 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 KLF2Q9Y5W3 355 aaPredicted RBP11.53□□□□□ -0.56
CLK3-204ENST00000483723 USF3Q68DE3 2245 aa11.53□□□□□ -0.56
CLK3-204ENST00000483723 FASNP49327 2511 aaKnown RBP11.53□□□□□ -0.56
CLK3-204ENST00000483723 BAHCC1Q9P281 2608 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 A0A087X0M5 115 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 A0A1B0GX30 115 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 RPS10-NUDT3A0A1W2PQS6 291 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 TAAR5O14804 337 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 ATG12O94817 140 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 IGHV3-7P01780 117 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 POLR2GP62487 172 aaKnown RBP eCLIP11.52□□□□□ -0.56
CLK3-204ENST00000483723 RPL39P5Q59GN2 51 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 CLLU1Q5K131 121 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 LINC00311Q8N616 119 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 C8orf46Q8TAG6 207 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 SCARB1Q8WTV0 552 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 GSX2Q9BZM3 304 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 CHODLQ9H9P2 273 aa11.52□□□□□ -0.56
CLK3-204ENST00000483723 SPTBN1Q01082 2364 aaKnown RBP11.52□□□□□ -0.57
CLK3-204ENST00000483723 M0R1X1 148 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 OVOL3O00110 214 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 GPR137BO60478 399 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 LY6HO94772 140 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 S1PR2O95136 353 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 F12P00748 615 aaPredicted RBP11.52□□□□□ -0.57
CLK3-204ENST00000483723 PLA2G2AP14555 144 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 ERVFRD-1P60508 538 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 AVPI1Q5T686 147 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 IGFBPL1Q8WX77 278 aa11.52□□□□□ -0.57
CLK3-204ENST00000483723 NEIL1Q96FI4 390 aaPredicted RBP11.52□□□□□ -0.57
CLK3-204ENST00000483723 TIMD4Q96H15 378 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms