RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TMED7-TICAM2A0A0A6YYA0 188 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 WI2-2373I1.2A0A1W2PRP0 233 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 RIIAD1A6NNX1 92 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 C12orf77C9JDV5 145 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 E9PLD3 99 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 XKRYO14609 159 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 NDUFS5O43920 106 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 CA2P00918 260 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 SNRPCP09234 159 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 BRS3P32247 399 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 GABRA3P34903 492 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 SPRP35270 261 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 RPL34P49207 117 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 RAB5CP51148 216 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF140P52738 457 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 PAX8Q06710 450 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 INCA1Q0VD86 236 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 LAMTOR4Q0VGL1 99 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 PNOCQ13519 176 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 CCL15Q16663 113 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 LCN8Q6JVE9 175 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 FAAP20Q6NZ36 180 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 RASL11AQ6T310 242 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 NOTCH2NLQ7Z3S9 236 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 TCTE3Q8IZS6 198 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC25A45Q8N413 288 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 FAM71E2Q8N5Q1 922 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 STPG4Q8N801 248 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 C11orf72Q8NBR9 251 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 MAPK1IP1LQ8NDC0 245 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 OR10AD1Q8NGE0 317 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 OR5K1Q8NHB7 308 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF420Q8TAQ5 688 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 KLK6Q92876 244 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM106AQ96A25 262 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 RNF185Q96GF1 192 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC25A44Q96H78 314 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 TSPAN32Q96QS1 320 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 HSD17B10Q99714 261 aaKnown RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 PRADC1Q9BSG0 188 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 OR2J1Q9GZK6 312 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF331Q9NQX6 463 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 MTFP1Q9UDX5 166 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 BOKQ9UMX3 212 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 MED31Q9Y3C7 131 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 V9GYS6 101 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 ROBO3Q96MS0 1386 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 COL5A2P05997 1499 aaPredicted RBP3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 MAP3K1Q13233 1512 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 PTPRTO14522 1441 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 MYOM3Q5VTT5 1437 aa3.7□□□□□ -1.82
CCDC88A-210ENST00000468534 KNCNA6PVL3 124 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 SMIM1B2RUZ4 78 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 TBL1XO60907 577 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 KCNK2O95069 426 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 DUS4LO95620 317 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 SOD3P08294 240 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 CD1DP15813 335 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 NTF3P20783 257 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 RPS4Y1P22090 263 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 CASP1P29466 404 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 RPL29P47914 159 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 GNG4P50150 75 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 NDUFA8P51970 172 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 DEFA1P59665 94 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 FABP5Q01469 135 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM267Q0VDI3 215 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 FZD2Q14332 565 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 MLF2Q15773 248 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 CENPWQ5EE01 88 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 KDM4DQ6B0I6 523 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 C11orf71Q6IPW1 123 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 GLIPR1L1Q6UWM5 242 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 CLEC19AQ6UXS0 136 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 ANKRD29Q8N6D5 301 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 OR51T1Q8NGJ9 327 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 CHCHD10Q8WYQ3 142 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 MRPL57Q9BQC6 102 aaKnown RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 NRIP2Q9BQI9 281 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 ANAPC13Q9BS18 74 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 RHNO1Q9BSD3 238 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 RNF126Q9BV68 326 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF471Q9BX82 626 aaPredicted RBP3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 SAMD10Q9BYL1 202 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 SRXN1Q9BYN0 137 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC25A31Q9H0C2 315 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 ZBP1Q9H171 429 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 SRMSQ9H3Y6 488 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 LIME1Q9H400 295 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 JPT2Q9H910 190 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 PDFQ9HBH1 243 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 PARP11Q9NR21 331 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 MARCH5Q9NX47 278 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 OR5AC2Q9NZP5 309 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 RBM12B-AS1Q9P1G2 102 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 NAT8Q9UHE5 227 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 UGT2A1Q9Y4X1 527 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 V9GY05 133 aa3.69□□□□□ -1.82
CCDC88A-210ENST00000468534 NCAPD3P42695 1498 aa3.68□□□□□ -1.82
CCDC88A-210ENST00000468534 IGLV5-45A0A087WSX0 123 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms