RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IGHV3-72A0A0B4J1Y9 119 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 WI2-2373I1.2A0A1W2PRP0 233 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 MAGEA13PA6NCF6 341 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 C12orf77C9JDV5 145 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 H0YHG0 523 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 EBAG9O00559 213 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 SC5DO75845 299 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 GLAP06280 429 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 IGHV3-43DP0DP04 118 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 HOXD3P31249 432 aaPredicted RBP5.67□□□□□ -1.5
USP54-208ENST00000461520 GPR12P47775 334 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 ST3GAL4Q11206 333 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 ANXA2RQ3ZCQ2 193 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 SYT6Q5T7P8 510 aaPredicted RBP5.67□□□□□ -1.5
USP54-208ENST00000461520 RAB12Q6IQ22 244 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 GLIPR1L1Q6UWM5 242 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 UNQ9370/PRO34162Q6UXP9 181 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 C18orf65Q6ZTR6 163 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 JAGN1Q8N5M9 183 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 PACRGLQ8N7B6 248 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 ZNF439Q8NDP4 499 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 CYGBQ8WWM9 190 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 THRSPQ92748 146 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 MUL1Q969V5 352 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 S1PR3Q99500 378 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 DCLRE1BQ9H816 532 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 PLSCR3Q9NRY6 295 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 CNOT2Q9NZN8 540 aaKnown RBP5.67□□□□□ -1.5
USP54-208ENST00000461520 GNG12Q9UBI6 72 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 TRAPPC2LQ9UL33 140 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 MRPS28Q9Y2Q9 187 aaKnown RBP5.67□□□□□ -1.5
USP54-208ENST00000461520 PEX16Q9Y5Y5 336 aa5.67□□□□□ -1.5
USP54-208ENST00000461520 RYR2Q92736 4967 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 EPPK1P58107 5090 aaKnown RBP5.66□□□□□ -1.5
USP54-208ENST00000461520 A0A1W2PPK0 400 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 EFCAB10A6NFE3 127 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 CCL24O00175 119 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 SLC31A2O15432 143 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 RAMP3O60896 148 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 HBZP02008 142 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 MAS1P04201 325 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 IGF1P05019 195 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 OR5H8P0DN80 308 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 MGMTP16455 207 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 RCC1P18754 421 aaPredicted RBP5.66□□□□□ -1.5
USP54-208ENST00000461520 FUT3P21217 361 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 MAPK3P27361 379 aaPredicted RBP5.66□□□□□ -1.5
USP54-208ENST00000461520 SOX6P35712 828 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 CAPGP40121 348 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 VHLP40337 213 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 CDX1P47902 265 aaPredicted RBP5.66□□□□□ -1.5
USP54-208ENST00000461520 ADARB1P78563 741 aaKnown RBP5.66□□□□□ -1.5
USP54-208ENST00000461520 GPR50Q13585 617 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 KIR2DS1Q14954 304 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 MORN2Q502X0 79 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 CT45A1Q5HYN5 189 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 CXorf66Q5JRM2 361 aaPredicted RBP5.66□□□□□ -1.5
USP54-208ENST00000461520 FAM53AQ6NSI3 398 aaPredicted RBP5.66□□□□□ -1.5
USP54-208ENST00000461520 ZNF554Q86TJ5 538 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 LYPD6Q86Y78 171 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 DHRSXQ8N5I4 330 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 FAM71E2Q8N5Q1 922 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 NKAIN3Q8N8D7 197 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 ZFP41Q8N8Y5 198 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 OR8U1Q8NH10 309 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 OR4K15Q8NH41 348 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 CT45A3Q8NHU0 189 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 UBALD1Q8TB05 177 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 GLMPQ8WWB7 406 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 GGHQ92820 318 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 DERL3Q96Q80 235 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 B9D2Q9BPU9 175 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 CHCHD6Q9BRQ6 235 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 UQCC2Q9BRT2 126 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 SELENOIQ9C0D9 397 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 OR2S2Q9NQN1 319 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 GHRLQ9UBU3 117 aa5.66□□□□□ -1.5
USP54-208ENST00000461520 ZNF736B4DX44 427 aaPredicted RBP5.65□□□□□ -1.5
USP54-208ENST00000461520 MYL12BO14950 172 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 LANCL1O43813 399 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 PDCD6O75340 191 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 CRTAPO75718 401 aaPredicted RBP5.65□□□□□ -1.5
USP54-208ENST00000461520 IGHG4P01861 327 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 UBBP0CG47 229 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 CELP19835 753 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 VDAC1P21796 283 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 F2RL1P55085 397 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 WNT4P56705 351 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 HTD2P86397 168 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 LRRC36Q1X8D7 754 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 LY6G6FQ5SQ64 297 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 PIK3CD-AS1Q5SR53 167 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 C8orf59Q8N0T1 100 aaPredicted RBP5.65□□□□□ -1.5
USP54-208ENST00000461520 OR10V1Q8NGI7 309 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 OR5M8Q8NGP6 311 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 OR1L1Q8NH94 360 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 HSPB9Q9BQS6 159 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 CST11Q9H112 138 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 BANF2Q9H503 90 aa5.65□□□□□ -1.5
USP54-208ENST00000461520 TAF9BQ9HBM6 251 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms