RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SPACA1Q9HBV2 294 aa1.21□□□□□ -2.22
USP40-209ENST00000452724 RPL26L1Q9UNX3 145 aaKnown RBP1.21□□□□□ -2.22
USP40-209ENST00000452724 NUP153P49790 1475 aaKnown RBP1.2□□□□□ -2.22
USP40-209ENST00000452724 GOLGA8RI6L899 631 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 SLC17A3O00476 420 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 HBZP02008 142 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 CRYBB3P26998 211 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 SERPINB10P48595 397 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 DAPP51397 102 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 TAS2R45P59539 299 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 DAD1P61803 113 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 TBC1D28Q2M2D7 210 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 MESTQ5EB52 335 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 SPATA31B1PQ5VZV4 182 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 DEFB119Q8N690 84 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 OR7D2Q96RA2 312 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 TMEM208Q9BTX3 173 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 TIMM21Q9BVV7 248 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 GNB1LQ9BYB4 327 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 EIF5A2Q9GZV4 153 aaKnown RBP1.2□□□□□ -2.22
USP40-209ENST00000452724 PUS1Q9Y606 427 aaKnown RBP eCLIP1.2□□□□□ -2.22
USP40-209ENST00000452724 RGS12O14924 1447 aa1.2□□□□□ -2.22
USP40-209ENST00000452724 HELZ2Q9BYK8 2649 aaKnown RBP1.19□□□□□ -2.22
USP40-209ENST00000452724 LINC00854A0A1B0GVQ3 168 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 TRPC5OSA6NMA1 111 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 OR5K4A6NMS3 321 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 C2orf74A8MZ97 194 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 OR11H12B2RN74 326 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 CALUO43852 315 aaPredicted RBP1.19□□□□□ -2.22
USP40-209ENST00000452724 PSMG1O95456 288 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 IGHV1-69P01742 117 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 ORM1P02763 201 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 ARL14EPLP0DKL9 152 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 F8A1P23610 371 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 ZNF90Q03938 601 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 LRRC26Q2I0M4 334 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 TMEM31Q5JXX7 168 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 AMTNQ6UX39 209 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 Q6ZRN7 208 aaPredicted RBP1.19□□□□□ -2.22
USP40-209ENST00000452724 Q6ZTI0 123 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 OR7G1Q8NGA0 311 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 OR11H2Q8NH07 326 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 LHFPL5Q8TAF8 219 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 MIEN1Q9BRT3 115 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 NKX6-2Q9C056 277 aaPredicted RBP1.19□□□□□ -2.22
USP40-209ENST00000452724 OR51B6Q9H340 312 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 NRBP2Q9NSY0 501 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 FAM215AQ9Y5M1 114 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 COL4A1P02462 1669 aa1.19□□□□□ -2.22
USP40-209ENST00000452724 DENND4BO75064 1496 aaPredicted RBP1.18□□□□□ -2.22
USP40-209ENST00000452724 MDFIC2A0A1B0GVS7 189 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 ZNF728P0DKX0 622 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 CFL1P23528 166 aaKnown RBP1.18□□□□□ -2.22
USP40-209ENST00000452724 CRATP43155 626 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 XCL1P47992 114 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 RAP1GDS1P52306 607 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 HERVK_113P63121 156 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 ZNHIT3Q15649 155 aaPredicted RBP1.18□□□□□ -2.22
USP40-209ENST00000452724 UAP1Q16222 522 aaPredicted RBP1.18□□□□□ -2.22
USP40-209ENST00000452724 HSP90B2PQ58FF3 399 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 PDPK2PQ6A1A2 396 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 ATP5L2Q7Z4Y8 100 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 CNEP1R1Q8N9A8 125 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 OR2D3Q8NGH3 330 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 RBP7Q96R05 134 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 NDEL1Q9GZM8 345 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 METTL9Q9H1A3 318 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 SPANXB1Q9NS25 103 aaPredicted RBP1.18□□□□□ -2.22
USP40-209ENST00000452724 RP1L1Q8IWN7 2480 aaPredicted RBP1.18□□□□□ -2.22
USP40-209ENST00000452724 PIK3R4Q99570 1358 aa1.18□□□□□ -2.22
USP40-209ENST00000452724 RAD50Q92878 1312 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 NPATQ14207 1427 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 TRGV2A0A075B6R0 118 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 A0A1B0GVG6 124 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 DAPL1A0PJW8 107 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 GOLGA6L10A6NI86 522 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 CCRL2O00421 344 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 COPEO14579 308 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 MRASO14807 208 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 UBE2L6O14933 153 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 GSTZ1O43708 216 aaPredicted RBP1.17□□□□□ -2.22
USP40-209ENST00000452724 YEATS4O95619 227 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 CRYBA1P05813 215 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 OCMP0CE72 109 aaPredicted RBP1.17□□□□□ -2.22
USP40-209ENST00000452724 RD3LP0DJH9 198 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 HIST1H1CP16403 213 aaKnown RBP1.17□□□□□ -2.22
USP40-209ENST00000452724 PSMB6P28072 239 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 OR10J1P30954 320 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 CD79BP40259 229 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 CA7P43166 264 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 MAP3K7CLP57077 242 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 ERHP84090 104 aaKnown RBP1.17□□□□□ -2.22
USP40-209ENST00000452724 MGAT3Q09327 533 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 SDHAF4Q5VUM1 108 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 LCN8Q6JVE9 175 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 BLIDQ8IZY5 108 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 SPACA4Q8TDM5 124 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 TLCD1Q96CP7 247 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 WDR54Q9H977 334 aa1.17□□□□□ -2.22
USP40-209ENST00000452724 SLC2A9Q9NRM0 540 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms