RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SULT1A1P50225 295 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 SSTP61278 116 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 LYZP61626 148 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 SCGB2A2Q13296 93 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 ECSCRQ19T08 205 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 BPIFCQ8NFQ6 507 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 DOCK7Q96N67 2140 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 C5orf66Q9H5L9 145 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 SLC25A22Q9H936 323 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 FAM106CPP0CH98 169 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 PGA5P0DJD9 388 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 HOXD11P31277 338 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-213ENST00000448038 BMI1P35226 326 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 CDKN1AP38936 164 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 P2RY4P51582 365 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 RHOBP62745 196 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 S100A12P80511 92 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM30BQ3MIR4 351 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 HIST2H3AQ71DI3 136 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 C17orf50Q8WW18 174 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 CXorf58Q96LI9 332 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 SAV1Q9H4B6 383 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-213ENST00000448038 URGCP-MRPS24S4R325 110 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 MAP1LC3B2A6NCE7 125 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 CDC34P49427 236 aaPredicted RBP6.27□□□□□ -1.4
SYNE1-213ENST00000448038 DCAF12L2Q5VW00 463 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 PAQR4Q8N4S7 273 aaPredicted RBP6.27□□□□□ -1.4
SYNE1-213ENST00000448038 OR10G4Q8NGN3 311 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 OR10G9Q8NGN4 311 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 OR10G7Q8NGN6 311 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 BTF3L4Q96K17 158 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 WFIKKN1Q96NZ8 548 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 CLEC7AQ9BXN2 247 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 MAP1LC3BQ9GZQ8 125 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 SMCO4Q9NRQ5 59 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 MMP24Q9Y5R2 645 aa6.27□□□□□ -1.4
SYNE1-213ENST00000448038 FER1L5A0AVI2 2057 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 COL4A4P53420 1690 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 DVL1O14640 695 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 MELTFP08582 738 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 DVL1P1P54792 670 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 ZFP82Q8N141 532 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 ST6GALNAC3Q8NDV1 305 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 OR4F17Q8NGA8 305 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 DPF1Q92782 380 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 SLC45A2Q9UMX9 530 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 C12orf77C9JDV5 145 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 H7BYZ3 331 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 RPL27AP46776 148 aaKnown RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 C11orf91Q3C1V1 193 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 BTNL8Q6UX41 500 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 IGFL3Q6UXB1 125 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 ZNF818PQ6ZRF7 136 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 FGFRL1Q8N441 504 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 PNKDQ8N490 385 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 OR1L4Q8NGR5 311 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 PHYHIPLQ96FC7 376 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 AAMDCQ9H7C9 122 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 CBLN4Q9NTU7 201 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 SLC25A15Q9Y619 301 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 MPDZO75970 2070 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 C1QTNF9BB2RNN3 333 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 TOX4O94842 621 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 GOSR1O95249 250 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 C1QTNF9P0C862 333 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 HIST3H3Q16695 136 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 PRR30Q53SZ7 412 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 CLLU1Q5K131 121 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 NRIP2Q9BQI9 281 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 METTL1Q9UBP6 276 aaKnown RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 TP53BP1Q12888 1972 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 ETV2O00321 342 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 FHL1Q13642 323 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 HABP2Q14520 560 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 GUK1Q16774 197 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 ANKRD55Q3KP44 614 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 C1QTNF12Q5T7M4 302 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 WDR82Q6UXN9 313 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 FAM90A1Q86YD7 464 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 DRAM1Q8N682 238 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 OR1B1Q8NGR6 318 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 SSMEM1Q8WWF3 244 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 RSPO3Q9BXY4 272 aaPredicted RBP6.27□□□□□ -1.41
SYNE1-213ENST00000448038 SLC2A8Q9NY64 477 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 PKDREJQ9NTG1 2253 aa6.27□□□□□ -1.41
SYNE1-213ENST00000448038 TMEM8BA6NDV4 472 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 CNN1P51911 297 aaKnown RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 UCP3P55916 312 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 PJVKQ0ZLH3 352 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 LRP11Q86VZ4 500 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 TMEM186Q96B77 213 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 SSBP3Q9BWW4 388 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 PNRC2Q9NPJ4 139 aaKnown RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 TUBD1Q9UJT1 453 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 COMMD1Q8N668 190 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 OR13A1Q8NGR1 328 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 FAM168AQ92567 244 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 SDHCQ99643 169 aaPredicted RBP6.26□□□□□ -1.41
SYNE1-213ENST00000448038 DCTN5Q9BTE1 182 aa6.26□□□□□ -1.41
SYNE1-213ENST00000448038 WISP1O95388 367 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms