RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SPINK4O60575 86 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ZG16O60844 167 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 NAPSAO96009 420 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 CCL11P51671 97 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ARL16Q0P5N6 197 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 Q5PR19 223 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ABLIM2Q6H8Q1 611 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ZNF525Q8N782 197 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 SCCPDHQ8NBX0 429 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 OR2T10Q8NGZ9 312 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 LYPD6BQ8NI32 183 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 PLPPR1Q8TBJ4 325 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 GATAD1Q8WUU5 269 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ZDHHC16Q969W1 377 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 TMEM147Q9BVK8 224 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 EGLN1Q9GZT9 426 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 PRDM6Q9NQX0 595 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 SERTAD4Q9NUC0 356 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 TREM2Q9NZC2 230 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 EYSQ5T1H1 3165 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 USF3Q68DE3 2245 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 C11orf94C9JXX5 98 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 IGHV2-5P01817 119 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ACOT6Q3I5F7 207 aaPredicted RBP10.08□□□□□ -0.8
MSH6-204ENST00000445503 DHRS13Q6UX07 377 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ASCL4Q6XD76 172 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ZNF705AQ6ZN79 300 aaPredicted RBP10.08□□□□□ -0.8
MSH6-204ENST00000445503 DEFB108BQ8NET1 73 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 RBM14Q96PK6 669 aaKnown RBP10.08□□□□□ -0.8
MSH6-204ENST00000445503 CISD1Q9NZ45 108 aaKnown RBP10.08□□□□□ -0.8
MSH6-204ENST00000445503 PITPNC1Q9UKF7 332 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 ADAMTS9Q9P2N4 1935 aa10.08□□□□□ -0.8
MSH6-204ENST00000445503 TRGV5A0A0B4J1U4 118 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 DVL1O14640 695 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 CDC34P49427 236 aaPredicted RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 SERF2P84101 59 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 NEIL1Q96FI4 390 aaPredicted RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 SAMD10Q9BYL1 202 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 WDR61Q9GZS3 305 aaKnown RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 KIAA1324LA8MWY0 1029 aaPredicted RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 M0R1X1 148 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 TGOLN2O43493 480 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 GYPAP02724 150 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 KITLGP21583 273 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 PAX6P26367 422 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 RIF1Q5UIP0 2472 aaKnown RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 MOB1BQ7L9L4 216 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 RAB24Q969Q5 203 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 TMEM18Q96B42 140 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 KLF13Q9Y2Y9 288 aaPredicted RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 S1PR2O95136 353 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 CELA3BP08861 270 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 HOXA4Q00056 320 aaPredicted RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 RNPS1Q15287 305 aaKnown RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 DPPA3Q6W0C5 159 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 RNF138Q8WVD3 245 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 SSMEM1Q8WWF3 244 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 HIPK2Q9H2X6 1198 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 TRAPPC1Q9Y5R8 145 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 RNF224P0DH78 156 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 ZNF324BQ6AW86 544 aaPredicted RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 FAM53AQ6NSI3 398 aaPredicted RBP10.07□□□□□ -0.8
MSH6-204ENST00000445503 PARLQ9H300 379 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 PLEKHA3Q9HB20 300 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 SH3BGRL2Q9UJC5 107 aa10.07□□□□□ -0.8
MSH6-204ENST00000445503 TRAV38-1A0A0B4J264 116 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 ZNF729A6NN14 1252 aaPredicted RBP10.06□□□□□ -0.8
MSH6-204ENST00000445503 ACTL6BO94805 426 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 TNFSF15O95150 251 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 PLA2G5P39877 138 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 PAX9P55771 341 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 TNFRSF9Q07011 255 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 ATP1A1-AS1Q5TC04 95 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 IL22RA2Q969J5 263 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 SDF2L1Q9HCN8 221 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 RAMP3O60896 148 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 DKK1O94907 266 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 ZNF90Q03938 601 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 DCAF10Q5QP82 559 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 Q6ZPA2 131 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 SAXO1Q8IYX7 474 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 TMEM105Q8N8V8 129 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 POM121L2Q96KW2 1035 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 ELOVL1Q9BW60 279 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 REV3LO60673 3130 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 LRP4O75096 1905 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 A0A087WWC5 75 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 CTXND1A0A1B0GTU2 59 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 ZNF503-AS2A6NEH8 195 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 F6UZH7 168 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 GATCO43716 136 aaKnown RBP10.06□□□□□ -0.8
MSH6-204ENST00000445503 IGKV1-5P01602 117 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 HBZP02008 142 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 CYC1P08574 325 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 DDTP30046 118 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 LINC00205P59089 165 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 TFF3Q07654 80 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 LRRC75BQ2VPJ9 315 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 BAGE3Q86Y29 109 aa10.06□□□□□ -0.8
MSH6-204ENST00000445503 BAGE2Q86Y30 109 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms