RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ZNF443Q9Y2A4 671 aaPredicted RBP1.64□□□□□ -2.15
VPS41-207ENST00000439468 SNX24Q9Y343 169 aa1.64□□□□□ -2.15
VPS41-207ENST00000439468 U3KQK5 164 aa1.64□□□□□ -2.15
VPS41-207ENST00000439468 PTPRBP23467 1997 aa1.64□□□□□ -2.15
VPS41-207ENST00000439468 ASXL3Q9C0F0 2248 aa1.64□□□□□ -2.15
VPS41-207ENST00000439468 DOCK1Q14185 1865 aa1.64□□□□□ -2.15
VPS41-207ENST00000439468 PKD1L1Q8TDX9 2849 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 RP1L1Q8IWN7 2480 aaPredicted RBP1.63□□□□□ -2.15
VPS41-207ENST00000439468 NBEAL2Q6ZNJ1 2754 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 IGHV3-21A0A0B4J1V1 117 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 GOLGA8QA0A0J9YX86 632 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 GOLGA6L4A6NEF3 574 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 CD300LBA8K4G0 201 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 GGTLC3B5MD39 225 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 H3BMM0 161 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 AQP9O43315 295 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 PDCD6O75340 191 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 PSIP1O75475 530 aaKnown RBP1.63□□□□□ -2.15
VPS41-207ENST00000439468 CBR3O75828 277 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 LDOC1O95751 146 aaPredicted RBP1.63□□□□□ -2.15
VPS41-207ENST00000439468 CA2P00918 260 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 APOA1P02647 267 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 SPNP16150 400 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 CTLA4P16410 223 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 MAGEA6P43360 314 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 TTPAP49638 278 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 ZNF83P51522 516 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 CD164Q04900 197 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 ZNF470Q6ECI4 717 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 LAIR2Q6ISS4 152 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 FAM19A3Q7Z5A8 133 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 TMEM25Q86YD3 366 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 EIF4E3Q8N5X7 224 aaKnown RBP1.63□□□□□ -2.15
VPS41-207ENST00000439468 ZIC4Q8N9L1 334 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 OR8A1Q8NGG7 326 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 TMEM239Q8WW34 195 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 IFT81Q8WYA0 676 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 UBE2WQ96B02 151 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 SUCNR1Q9BXA5 334 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 TRAPPC1Q9Y5R8 145 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 STAB1Q9NY15 2570 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 ZNF469Q96JG9 3925 aaPredicted RBP1.63□□□□□ -2.15
VPS41-207ENST00000439468 ICE1Q9Y2F5 2266 aa1.63□□□□□ -2.15
VPS41-207ENST00000439468 APC2O95996 2303 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 MYH13Q9UKX3 1938 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 MTORP42345 2549 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 ANKHD1Q8IWZ3 2542 aaKnown RBP1.62□□□□□ -2.15
VPS41-207ENST00000439468 NIPBLQ6KC79 2804 aaeCLIP1.62□□□□□ -2.15
VPS41-207ENST00000439468 IGKV1D-37A0A075B6S9 117 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 A0A1B0GTI1 187 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 ERICH4A6NGS2 130 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 ZNF879B4DU55 563 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 C8orf87E5RJ46 101 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 SGCEO43556 437 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 ZNF708P17019 499 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 CNTFRP26992 372 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 GTF2H1P32780 548 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 EVI2BP34910 448 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 RHOAP61586 193 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 TSPAN5P62079 268 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 MEF2BQ02080 365 aaPredicted RBP1.62□□□□□ -2.15
VPS41-207ENST00000439468 CASP8Q14790 479 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 BSXQ3C1V8 233 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 LGALSLQ3ZCW2 172 aaPredicted RBP1.62□□□□□ -2.15
VPS41-207ENST00000439468 OR10J3Q5JRS4 329 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 TMEM215Q68D42 235 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 ZFAND6Q6FIF0 208 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 LRP11Q86VZ4 500 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 LRRC6Q86X45 466 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 KRTAP13-1Q8IUC0 172 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 OR4A5Q8NH83 315 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 C19orf60Q96EN9 201 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 SLC25A44Q96H78 314 aaPredicted RBP1.62□□□□□ -2.15
VPS41-207ENST00000439468 SERPINB11Q96P15 392 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 PITX2Q99697 317 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 TSGA10Q9BZW7 698 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 METTL17Q9H7H0 456 aaPredicted RBP1.62□□□□□ -2.15
VPS41-207ENST00000439468 TBL2Q9Y4P3 447 aaKnown RBP1.62□□□□□ -2.15
VPS41-207ENST00000439468 USH1CQ9Y6N9 552 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 PLXNA4Q9HCM2 1894 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 MICAL3Q7RTP6 2002 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 ACACAQ13085 2346 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 CCDC168Q8NDH2 2452 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 APCP25054 2843 aa1.62□□□□□ -2.15
VPS41-207ENST00000439468 CENPEQ02224 2701 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 EML5Q05BV3 1969 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 RYR3Q15413 4870 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 IBTKQ9P2D0 1353 aaPredicted RBP1.61□□□□□ -2.15
VPS41-207ENST00000439468 JMJD1CQ15652 2540 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 IGHV2-26A0A0B4J1V2 119 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 FAM183AA6NL82 134 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 LEUTXA8MZ59 168 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 PLPP3O14495 311 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 TNFAIP8O95379 198 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 IGHV3-53P01767 116 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 GP1BAP07359 652 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 SLC2A1P11166 492 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 MLNP12872 115 aa1.61□□□□□ -2.15
VPS41-207ENST00000439468 LGALS3P17931 250 aaKnown RBP1.61□□□□□ -2.15
VPS41-207ENST00000439468 CRABP2P29373 138 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms