RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 S1PR2O95136 353 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 IGKV2D-28P01615 120 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 HLA-DQA1P01909 254 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 SERPINA7P05543 415 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 CRYGDP07320 174 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 IL1RNP18510 177 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 OR10J1P30954 320 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 GABRA3P34903 492 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 ESRRGP62508 458 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 HERVK_113P63121 156 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 CAV1Q03135 178 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 BTN1A1Q13410 526 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 C1orf194Q5T5A4 169 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 MRPL2Q5T653 305 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 MORN3Q6PF18 240 aaPredicted RBP3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 SBSNQ6UWP8 590 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 KRTAP5-2Q701N4 177 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 ZNF567Q8N184 647 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 SLC35F6Q8N357 371 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 TMEM35BQ8NCS4 154 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 OR5W2Q8NH69 310 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 LHFPL5Q8TAF8 219 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 GNPDA2Q8TDQ7 276 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 REEP6Q96HR9 211 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 C11orf49Q9H6J7 331 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 C12orf10Q9HB07 376 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 CA10Q9NS85 328 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 CISHQ9NSE2 258 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 TAS2R1Q9NYW7 299 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 MRPL27Q9P0M9 148 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 TBX21Q9UL17 535 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 PKIGQ9Y2B9 76 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 NDUFAF1Q9Y375 327 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 UFC1Q9Y3C8 167 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 TMEM14AQ9Y6G1 99 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 PXMP4Q9Y6I8 212 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 ATRNO75882 1429 aa3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 SETD1AO15047 1707 aaKnown RBP3.33□□□□□ -1.88
CCDC88A-206ENST00000430086 MT-CO2P00403 227 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 S100A2P29034 98 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 HSPE1P61604 102 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 EIF4EBP1Q13541 118 aaPredicted RBP3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 SMCO1Q147U7 214 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 ALKAL1Q6UXT8 129 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 SMIM20Q8N5G0 67 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 ZNF439Q8NDP4 499 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 LY6G5BQ8NDX9 201 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 NARS2Q96I59 477 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 GPER1Q99527 375 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 GINS3Q9BRX5 216 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 MARVELD1Q9BSK0 173 aa3.32□□□□□ -1.88
CCDC88A-206ENST00000430086 SYNMO15061 1565 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 GRIN2BQ13224 1484 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 IGHV1-69-2A0A0G2JMI3 117 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 EXOC1LA0A1B0GW35 172 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 hADV38S2A0JD32 116 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 TMEM223A0PJW6 202 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 OR4C45A6NMZ5 311 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 KNCNA6PVL3 124 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 DHFRP00374 187 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 FGF6P10767 208 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 ESDP10768 282 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 CNTFRP26992 372 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 LOXL1Q08397 574 aaPredicted RBP3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 EBLN2Q6P2I7 272 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 TBPL2Q6SJ96 375 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 TMPPEQ6ZT21 453 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 GRINAQ7Z429 371 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 OR52L1Q8NGH7 329 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 OR9A2Q8NGT5 310 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 OR2T27Q8NH04 317 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 CT55Q8WUE5 264 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 FOPNLQ96NB1 174 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 COMMD5Q9GZQ3 224 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 SND1-IT1Q9HBX3 110 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 PRTFDC1Q9NRG1 225 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 SPANXA1Q9NS26 97 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 C21orf62Q9NYP8 219 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 DHCR7Q9UBM7 475 aaKnown RBP3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 MYO10Q9HD67 2058 aa3.31□□□□□ -1.88
CCDC88A-206ENST00000430086 DCCP43146 1447 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 RTL1A6NKG5 1358 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 IGKV1-6A0A0C4DH72 117 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 GPR31O00270 319 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 LTAP01374 205 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 IGKV1-39P01597 117 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 IGLV3-25P01717 112 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 IGHG2P01859 326 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 IGKV1D-39P04432 117 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 HLA-DQB2P05538 268 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 GUSBP08236 651 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 NBEAP1P0C6P0 100 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 TLX1NBP0CAT3 122 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 C1GALT1C1LP0DN25 315 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 S100GP29377 79 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 CA7P43166 264 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 SNRPD2P62316 118 aaKnown RBP3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 MMDQ15546 238 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 PLPPR5Q32ZL2 321 aa3.3□□□□□ -1.88
CCDC88A-206ENST00000430086 LUZP6Q538Z0 58 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms