RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 REC114Q7Z4M0 266 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 P2RX4Q99571 388 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 TOLLIPQ9H0E2 274 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 PTPRBP23467 1997 aa12.01□□□□□ -0.49
LIG1-202ENST00000427526 C1QTNF9BB2RNN3 333 aa12□□□□□ -0.49
LIG1-202ENST00000427526 NXPH2O95156 264 aa12□□□□□ -0.49
LIG1-202ENST00000427526 PMS2P11Q13670 270 aa12□□□□□ -0.49
LIG1-202ENST00000427526 TMEM41BQ5BJD5 291 aa12□□□□□ -0.49
LIG1-202ENST00000427526 IGF2-ASQ6U949 168 aa12□□□□□ -0.49
LIG1-202ENST00000427526 IGFL2Q6UWQ7 119 aa12□□□□□ -0.49
LIG1-202ENST00000427526 TMEM14EPQ6UXP3 125 aa12□□□□□ -0.49
LIG1-202ENST00000427526 GCNT2Q8N0V5 402 aa12□□□□□ -0.49
LIG1-202ENST00000427526 GGACTQ9BVM4 153 aa12□□□□□ -0.49
LIG1-202ENST00000427526 RND2P52198 227 aa12□□□□□ -0.49
LIG1-202ENST00000427526 CYB5BO43169 146 aa12□□□□□ -0.49
LIG1-202ENST00000427526 PSPNO60542 156 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BKO60814 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BJP06899 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 P0C879 139 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BOP23527 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BBP33778 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 NBL1P41271 181 aa12□□□□□ -0.49
LIG1-202ENST00000427526 NDUFA6P56556 154 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BDP58876 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BCP62807 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 EIF4EBP1Q13541 118 aaPredicted RBP12□□□□□ -0.49
LIG1-202ENST00000427526 HIST2H2BEQ16778 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST2H2BFQ5QNW6 126 aaPredicted RBP12□□□□□ -0.49
LIG1-202ENST00000427526 CENPVQ7Z7K6 275 aaPredicted RBP12□□□□□ -0.49
LIG1-202ENST00000427526 MRGPRGQ86SM5 289 aa12□□□□□ -0.49
LIG1-202ENST00000427526 TAF15Q92804 592 aaKnown RBP eCLIP12□□□□□ -0.496e-7■■■■□ 23.8
LIG1-202ENST00000427526 HIST1H2BHQ93079 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 PINX1Q96BK5 328 aaKnown RBP12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BNQ99877 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HIST1H2BMQ99879 126 aa12□□□□□ -0.49
LIG1-202ENST00000427526 HES4Q9HCC6 221 aa12□□□□□ -0.49
LIG1-202ENST00000427526 SDF2L1Q9HCN8 221 aa12□□□□□ -0.49
LIG1-202ENST00000427526 RAC2P15153 192 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 TNFRSF9Q07011 255 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 TGIF2LXQ8IUE1 241 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 ZNF645Q8N7E2 425 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 OR13D1Q8NGV5 346 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 HSPB7Q9UBY9 170 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 VAX2Q9UIW0 290 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 LAMA5O15230 3695 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 IGHV3-64DA0A0J9YX35 117 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 RNF212BA8MTL3 300 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 IQCF6A8MYZ5 107 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 RAMP3O60896 148 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 TRGC2P03986 189 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 PSG7Q13046 419 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 MRPL49Q13405 166 aaKnown RBP11.99□□□□□ -0.49
LIG1-202ENST00000427526 C5orf30Q96GV9 206 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 RBKSQ9H477 322 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 GVINP1Q7Z2Y8 2422 aa11.99□□□□□ -0.49
LIG1-202ENST00000427526 CEP250Q9BV73 2442 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 TRAV17A0A0B4J275 112 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 HAND1O96004 215 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 CYB5R3P00387 301 aaPredicted RBP11.98□□□□□ -0.49
LIG1-202ENST00000427526 IGHG3P01860 377 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 G0S2P27469 103 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 SLC38A11Q08AI6 406 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 RPP25LQ8N5L8 163 aaKnown RBP11.98□□□□□ -0.49
LIG1-202ENST00000427526 SLC25A40Q8TBP6 338 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 TRIB1Q96RU8 372 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 LRFN3Q9BTN0 628 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 PRSS47A8MTI9 375 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 IGKV1D-33P01593 117 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 IGKV1-33P01594 117 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 SELEP16581 610 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 IGHV1-2P23083 117 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 CEBPDP49716 269 aaPredicted RBP11.98□□□□□ -0.49
LIG1-202ENST00000427526 GABRA6Q16445 453 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 AARDQ4LEZ3 155 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 SPNS3Q6ZMD2 512 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 ZBTB34Q8NCN2 500 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 OR1L1Q8NH94 360 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 C2orf88Q9BSF0 95 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 TIMM9Q9Y5J7 89 aa11.98□□□□□ -0.49
LIG1-202ENST00000427526 AKAP13Q12802 2813 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 MAP1LC3B2A6NCE7 125 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 CLDN34H7C241 214 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 MBP02144 154 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 GRPP07492 148 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 IDH3GP51553 393 aaPredicted RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 BRWD1-AS2P59051 145 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 RPL30P62888 115 aaKnown RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 WDR25Q64LD2 544 aaPredicted RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 GMPPAQ96IJ6 420 aaPredicted RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 MAP1LC3BQ9GZQ8 125 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 CDH20Q9HBT6 801 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 SPENQ96T58 3664 aaKnown RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 PTPRZ1P23471 2315 aaPredicted RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 UBE2L5PA0A1B0GUS4 154 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 TMEM210A6NLX4 147 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 ZNF891A8MT65 544 aaPredicted RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 C12orf77C9JDV5 145 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 FAM53AQ6NSI3 398 aaPredicted RBP11.97□□□□□ -0.49
LIG1-202ENST00000427526 ABHD5Q8WTS1 349 aa11.97□□□□□ -0.49
LIG1-202ENST00000427526 GALMQ96C23 342 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms