RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 ZNF221Q9UK13 617 aa11.46□□□□□ -0.58
CBX3-203ENST00000409747 AK6Q9Y3D8 172 aaKnown RBP11.46□□□□□ -0.58
CBX3-203ENST00000409747 KMT2CQ8NEZ4 4911 aaKnown RBP11.46□□□□□ -0.58
CBX3-203ENST00000409747 FOXI3A8MTJ6 420 aaPredicted RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 SPDEFO95238 335 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 CALRP27797 417 aaKnown RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 CD40LGP29965 261 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 VEGFCP49767 419 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 CX3CL1P78423 397 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 MRPS15P82914 257 aaKnown RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 NDPQ00604 133 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 C19orf54Q5BKX5 351 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 CD200R1LQ6Q8B3 271 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 GLDNQ6ZMI3 551 aaPredicted RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 OR5B12Q96R08 314 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 TSNAXQ99598 290 aaKnown RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 GFI1Q99684 422 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 CMSS1Q9BQ75 279 aaKnown RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 HDHD3Q9BSH5 251 aaPredicted RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 CCDC90BQ9GZT6 254 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 PARP12Q9H0J9 701 aaKnown RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 C11orf54Q9H0W9 315 aaPredicted RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 NKX1-2Q9UD57 310 aaPredicted RBP11.45□□□□□ -0.58
CBX3-203ENST00000409747 TENM3Q9P273 2699 aa11.45□□□□□ -0.58
CBX3-203ENST00000409747 OVOL1O14753 267 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 APOA2P02652 100 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 SERPINB10P48595 397 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 ASPHD1Q5U4P2 390 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 PRSS48Q7RTY5 328 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 FAM3DQ96BQ1 224 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 ARHGAP5-AS1Q96IT6 56 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 PECRQ9BY49 303 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 VCX3BQ9H321 246 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 ACOT13Q9NPJ3 140 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 FBXO7Q9Y3I1 522 aa11.44□□□□□ -0.58
CBX3-203ENST00000409747 ANKRD65E5RJM6 399 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 LINC01619G3V211 115 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 LY86O95711 162 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 LGALS1P09382 135 aaKnown RBP11.43□□□□□ -0.58
CBX3-203ENST00000409747 SCTP09683 121 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 AKIRIN2Q53H80 203 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 ACTBL2Q562R1 376 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 PPP1R27Q86WC6 154 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 PDPNQ86YL7 162 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.43□□□□□ -0.58
CBX3-203ENST00000409747 MGLLQ99685 303 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 METTL1Q9UBP6 276 aaKnown RBP11.43□□□□□ -0.58
CBX3-203ENST00000409747 NUBP2Q9Y5Y2 271 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 A3GALT2U3KPV4 340 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 U3KQK5 164 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 V9GY05 133 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 TRDCB7Z8K6 153 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 DENRO43583 198 aaKnown RBP11.43□□□□□ -0.58
CBX3-203ENST00000409747 TFAP2AP05549 437 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 CRHBPP24387 322 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 TMEM50BP56557 158 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 FABP5Q01469 135 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 ZNF562Q6V9R5 426 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 OR4A4PQ8NGN8 299 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 NRG4Q8WWG1 115 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 DCUN1D4Q92564 292 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 TOLLIPQ9H0E2 274 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 SLA2Q9H6Q3 261 aa11.43□□□□□ -0.58
CBX3-203ENST00000409747 ARPC1BO15143 372 aaKnown RBP11.42□□□□□ -0.58
CBX3-203ENST00000409747 SOX15O60248 233 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 CD3GP09693 182 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 HSPA13P48723 471 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 CLDN12P56749 244 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 PSG5Q15238 335 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 C2orf76Q3KRA6 126 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 UNQ5815/PRO19632Q6UWF5 114 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 RDH8Q9NYR8 311 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 RAB22AQ9UL26 194 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 BLOC1S6Q9UL45 172 aa11.42□□□□□ -0.58
CBX3-203ENST00000409747 FCN1O00602 326 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 PDCD5O14737 125 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 SAP30O75446 220 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 DIRAS3O95661 229 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 CA2P00918 260 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 EGR2P11161 476 aaPredicted RBP11.41□□□□□ -0.58
CBX3-203ENST00000409747 RPS16P62249 146 aaKnown RBP11.41□□□□□ -0.58
CBX3-203ENST00000409747 TBCEQ15813 527 aaPredicted RBP11.41□□□□□ -0.58
CBX3-203ENST00000409747 ZNF367Q7RTV3 350 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 DRAXINQ8NBI3 349 aaPredicted RBP11.41□□□□□ -0.58
CBX3-203ENST00000409747 ARPC1AQ92747 370 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 FLYWCH2Q96CP2 140 aaKnown RBP11.41□□□□□ -0.58
CBX3-203ENST00000409747 RAB3CQ96E17 227 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 ALX4Q9H161 411 aaPredicted RBP11.41□□□□□ -0.58
CBX3-203ENST00000409747 SMAD5-AS1Q9Y6J3 95 aa11.41□□□□□ -0.58
CBX3-203ENST00000409747 IGKV1-6A0A0C4DH72 117 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 LDLRAD4O15165 306 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 IGKV1-16P04430 117 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 OR8U9P0C7N5 309 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 GADD45AP24522 165 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 TPPP2P59282 170 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 CBX3Q13185 183 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 PLAC9Q5JTB6 97 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 ZNF383Q8NA42 475 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 OR6Q1Q8NGQ2 317 aa11.4□□□□□ -0.58
CBX3-203ENST00000409747 DLX4Q92988 240 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms