RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 DOK5Q9P104 306 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 MRPS18CQ9Y3D5 142 aaKnown RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 NHSL1Q5SYE7 1610 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 BCORQ6W2J9 1755 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 BTAF1O14981 1849 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM262E9PQX1 116 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 UBE2L6O14933 153 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 PGLYRP1O75594 196 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 GCM2O75603 506 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 RECKO95980 971 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 RD3LP0DJH9 198 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 PAX1P15863 534 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 GPR6P46095 362 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 MMDQ15546 238 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 C2orf68Q2NKX9 166 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 PUSL1Q8N0Z8 303 aaKnown RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 LRTM2Q8N967 370 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 POC1AQ8NBT0 407 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 SSMEM1Q8WWF3 244 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 GOLGA4Q13439 2230 aaKnown RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 LAMB2P55268 1798 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 H3BRM9 83 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 KLK10O43240 276 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 CSN3P07498 182 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 MGPP08493 103 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 VSIG10L2P0DP72 767 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 CD40P25942 277 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 EIF4EBP2Q13542 120 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 OTPQ5XKR4 325 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 ADAD2Q8NCV1 583 aaKnown RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 GPA33Q99795 319 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 TMUB1Q9BVT8 246 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 KCNK7Q9Y2U2 307 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 PAM16Q9Y3D7 125 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 hCG_38984A0A1B0GV85 526 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 OR11H12B2RN74 326 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 LYZL6O75951 148 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 CD160O95971 181 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 UCP2P55851 309 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 SRSF7Q16629 238 aaKnown RBP eCLIP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 TTC9CQ8N5M4 171 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 OR11H1Q8NG94 326 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 OR11H2Q8NH07 326 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 FAM222BQ8WU58 562 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 RSRP1Q9BUV0 290 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 CRISPLD2Q9H0B8 497 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 IGHV3-43A0A0B4J1X8 118 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 ODAMA1E959 279 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 A1L4Q6 167 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 IGHV3-43DP0DP04 118 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 COL10A1Q03692 680 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 DCAF10Q5QP82 559 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 FADS6Q8N9I5 356 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 OR4D11Q8NGI4 311 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 RNASEH2CQ8TDP1 164 aaKnown RBP5.27□□□□□ -1.57
SCN1A-203ENST00000409050 ISOC2Q96AB3 205 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 TNFRSF19Q9NS68 423 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 PILRAQ9UKJ1 303 aa5.27□□□□□ -1.57
SCN1A-203ENST00000409050 ANOS1P23352 680 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 ASIPP42127 132 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 CIARTQ8N365 385 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-203ENST00000409050 AMER3Q8N944 861 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 OR52M1Q8NGK5 317 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 DDB2Q92466 427 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 EEF1AKMT3Q96AZ1 226 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 FMC1Q96HJ9 113 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 FOXQ1Q9C009 403 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF324O75467 553 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-203ENST00000409050 UPK3AO75631 287 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 PPBPP02775 128 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 ZFP36L2P47974 494 aaKnown RBP5.26□□□□□ -1.57
SCN1A-203ENST00000409050 SIGLEC14Q08ET2 396 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM187Q14656 261 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 C9orf40Q8IXQ3 194 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 OR4X2Q8NGF9 303 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 OR10AC1Q8NH08 325 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 RHOVQ96L33 236 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 HIST1H4GQ99525 98 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 TCF21O43680 179 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 SPINK4O60575 86 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 DNAL4O96015 105 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 FHITP49789 147 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 SOX8P57073 446 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 JKAMPQ9P055 326 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 TINAGQ9UJW2 476 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 MRPS18BQ9Y676 258 aaKnown RBP5.26□□□□□ -1.57
SCN1A-203ENST00000409050 SLC17A3O00476 420 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 FOXS1O43638 330 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 NDUFB4O95168 129 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 TRGC2P03986 189 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 RCC1P18754 421 aaPredicted RBP5.26□□□□□ -1.57
SCN1A-203ENST00000409050 ZNF880Q6PDB4 577 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 PRNTQ86SH4 94 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 MDP1Q86V88 176 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 APCDD1LQ8NCL9 501 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 OR5A1Q8NGJ0 315 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 TMEM54Q969K7 222 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 MEGF10Q96KG7 1140 aa5.26□□□□□ -1.57
SCN1A-203ENST00000409050 AICDAQ9GZX7 198 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms