RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 Q6P435 159 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 RTL8AQ9BWD3 113 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 CDH20Q9HBT6 801 aa10.24□□□□□ -0.77
CLIP3-201ENST00000360535 PCSK5Q92824 1860 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 IGKV3D-15A0A087WSY6 115 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 PSPNO60542 156 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 S1PR2O95136 353 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 MAS1LP35410 378 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 CHRNA7P36544 502 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 EDDM3AQ14507 147 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 OR10G4Q8NGN3 311 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 OR10G9Q8NGN4 311 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 OR10G7Q8NGN6 311 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 PCGF1Q9BSM1 259 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 KCNIP1Q9NZI2 227 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 ABI3Q9P2A4 366 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 LRP5LA4QPB2 252 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 C9orf172C9J069 976 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 PAGE4O60829 102 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 AGFG2O95081 481 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 RAC2P15153 192 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 TMEM241Q24JQ0 296 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 ZNF66Q6ZN08 573 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 MRGPRGQ86SM5 289 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 DCTN5Q9BTE1 182 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 LINC00470Q9BZP3 86 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 H7BYZ3 331 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 SH2D1BO14796 132 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 Q3ZCU0 254 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 DCAF10Q5QP82 559 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 CST9LP1Q5W188 147 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 CNEP1R1Q8N9A8 125 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 SLC25A40Q8TBP6 338 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 NINJ1Q92982 152 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 TREM2Q9NZC2 230 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 WASF3Q9UPY6 502 aa10.23□□□□□ -0.77
CLIP3-201ENST00000360535 ZNF729A6NN14 1252 aaPredicted RBP10.22□□□□□ -0.77
CLIP3-201ENST00000360535 C17orf98A8MV24 154 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 PTBP3O95758 552 aaKnown RBP10.22□□□□□ -0.77
CLIP3-201ENST00000360535 PSMB3P49720 205 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 CD81P60033 236 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 UBE2NP61088 152 aaKnown RBP10.22□□□□□ -0.77
CLIP3-201ENST00000360535 PPP1CBP62140 327 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 MEF2BQ02080 365 aaPredicted RBP10.22□□□□□ -0.77
CLIP3-201ENST00000360535 TNFRSF9Q07011 255 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 SLC10A1Q14973 349 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 PRSS8Q16651 343 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 BSXQ3C1V8 233 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 CYB5R2Q6BCY4 276 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 ZNF709Q8N972 641 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 OR4X1Q8NH49 305 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 OR5B12Q96R08 314 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 STRADBQ9C0K7 418 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 COLQQ9Y215 455 aaPredicted RBP10.22□□□□□ -0.77
CLIP3-201ENST00000360535 SELLP14151 372 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 GALR1P47211 349 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 FABP6P51161 128 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 FAM3BP58499 235 aaPredicted RBP10.22□□□□□ -0.77
CLIP3-201ENST00000360535 COL10A1Q03692 680 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 P2RY6Q15077 328 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 TBC1D28Q2M2D7 210 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 GCSAMLQ5JQS6 135 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 PRAMEF6Q5VXH4 476 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 DPPA3Q6W0C5 159 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 OR10A7Q8NGE5 316 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 ARRDC1-AS1Q9H2J1 176 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 ARFGEF3Q5TH69 2177 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 ODAMA1E959 279 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 SSTR5P35346 364 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 OR51G1Q8NGK1 321 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 GALMQ96C23 342 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 PARLQ9H300 379 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 MSL2Q9HCI7 577 aa10.22□□□□□ -0.77
CLIP3-201ENST00000360535 PCNX2A6NKB5 2137 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 C1QTNF9BB2RNN3 333 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 B4DEV8 164 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 ST8SIA5O15466 376 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 HAND1O96004 215 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 PNRC1Q12796 327 aaPredicted RBP10.21□□□□□ -0.77
CLIP3-201ENST00000360535 ZNF497Q6ZNH5 498 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 OR10P1Q8NGE3 313 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 OR13D1Q8NGV5 346 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 LSM10Q969L4 123 aaKnown RBP10.21□□□□□ -0.77
CLIP3-201ENST00000360535 HIST1H2BLQ99880 126 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 PRDM13Q9H4Q3 707 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 FUT9Q9Y231 359 aa10.21□□□□□ -0.77
CLIP3-201ENST00000360535 XKRY2A2RUG3 117 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 PGPEP1LA6NFU8 196 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 B4E171 279 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 PPP5D1E7EU14 171 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 IFNL4K9M1U5 179 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 GZMHP20718 246 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 COL8A2P25067 703 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 TSPAN7P41732 249 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 EDDM3BP56851 147 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 SERF2P84101 59 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 SRSF7Q16629 238 aaKnown RBP eCLIP10.21□□□□□ -0.78
CLIP3-201ENST00000360535 MBD3L1Q8WWY6 194 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 NAT8Q9UHE5 227 aa10.21□□□□□ -0.78
CLIP3-201ENST00000360535 PSG11Q9UQ72 335 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms