RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HPRT1P00492 218 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 SCAND1P57086 179 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 FAM131CQ96AQ9 280 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 RAX2Q96IS3 184 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 A0A1W2PP11 408 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 MPDU1O75352 247 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 C1QCP02747 245 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 IGHV1-45A0A0A0MS14 117 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 CTXND1A0A1B0GTU2 59 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 LAMB1P07942 1786 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 HMGA2P52926 109 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 PLPPR5Q32ZL2 321 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 SMRP1Q8NCR6 262 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 V9GYH0 126 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 LMX1BO60663 402 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 HTN3P15516 51 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 LINC01560Q8TB33 94 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 RBKSQ9H477 322 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 OR4C45A6NMZ5 311 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 SGMS2Q8NHU3 365 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 WFIKKN1Q96NZ8 548 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 MIXL1Q9H2W2 232 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 FOXS1O43638 330 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 CD160O95971 181 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 VSIG10L2P0DP72 767 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 RNF133Q8WVZ7 376 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 C10orf35Q96D05 121 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 TSPAN2O60636 221 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 GPX1P07203 203 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 RIPPLY3P57055 190 aa10.91□□□□□ -0.66
SDC3-201ENST00000336798 B4DEV8 164 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 MIC13Q5XKP0 118 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 CALHM1Q8IU99 346 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 OR52M1Q8NGK5 317 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 TUBA4BQ9H853 241 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 C9JCJ5 164 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 WNT9BO14905 357 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 RND2P52198 227 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 ATP5G2Q06055 141 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 C10orf111Q8N326 155 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 PLCH1Q4KWH8 1693 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 KIF13AQ9H1H9 1805 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.9□□□□□ -0.66
SDC3-201ENST00000336798 A0A1W2PS18 150 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 ANOS1P23352 680 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 IBA57Q5T440 356 aaKnown RBP10.9□□□□□ -0.66
SDC3-201ENST00000336798 FAM214BQ7L5A3 538 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 HMGCLL1Q8TB92 370 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 PPIAL4CA0A0B4J2A2 164 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 C7orf71A4D174 169 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 PPIAL4GP0DN37 164 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 LGALS3P17931 250 aaKnown RBP10.9□□□□□ -0.66
SDC3-201ENST00000336798 CACNG7P62955 275 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 CYB561D1Q8N8Q1 229 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 MBD3L1Q8WWY6 194 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 HIST1H4GQ99525 98 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 ALKBH7Q9BT30 221 aaPredicted RBP10.9□□□□□ -0.66
SDC3-201ENST00000336798 NPVFQ9HCQ7 196 aa10.9□□□□□ -0.66
SDC3-201ENST00000336798 CDS2O95674 445 aa10.9□□□□□ -0.67
SDC3-201ENST00000336798 PQLC2Q6ZP29 291 aa10.9□□□□□ -0.67
SDC3-201ENST00000336798 LINC00596Q86U02 117 aa10.9□□□□□ -0.67
SDC3-201ENST00000336798 WNT2BQ93097 391 aa10.9□□□□□ -0.67
SDC3-201ENST00000336798 KCNK7Q9Y2U2 307 aa10.9□□□□□ -0.67
SDC3-201ENST00000336798 CXorf51AA0A1B0GTR3 108 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 IGHV4-34P06331 123 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 NANOS3P60323 173 aaKnown RBP10.89□□□□□ -0.67
SDC3-201ENST00000336798 CEACAM21Q3KPI0 293 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 LAMTOR1Q6IAA8 161 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 CITED1Q99966 193 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 SCNM1Q9BWG6 230 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 GFRA3O60609 400 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 PITX3O75364 302 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 MBNL2Q5VZF2 373 aaKnown RBP10.89□□□□□ -0.67
SDC3-201ENST00000336798 SLC22A18ASQ8N1D0 253 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 HSPB9Q9BQS6 159 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 OR5AC2Q9NZP5 309 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 NDUFS6O75380 124 aaKnown RBP10.89□□□□□ -0.67
SDC3-201ENST00000336798 SMAGPQ0VAQ4 97 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 CDCP2Q5VXM1 449 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 ZNF645Q8N7E2 425 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 CCL27Q9Y4X3 112 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 ITGB4P16144 1822 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 SOD3P08294 240 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 COX6CP09669 75 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 REPIN1Q9BWE0 567 aaKnown RBP10.89□□□□□ -0.67
SDC3-201ENST00000336798 CTDSPLO15194 276 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 MPV17P39210 176 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 UCNP55089 124 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 SNAI3Q3KNW1 292 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 ZCCHC14Q8WYQ9 949 aaKnown RBP10.89□□□□□ -0.67
SDC3-201ENST00000336798 GPR82Q96P67 336 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 CALYQ9NYX4 217 aa10.89□□□□□ -0.67
SDC3-201ENST00000336798 PRR19A6NJB7 356 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 KLK2P20151 261 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 A0A1W2PQF6 199 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 RPL8P62917 257 aaKnown RBP10.88□□□□□ -0.67
SDC3-201ENST00000336798 WDR54Q9H977 334 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 RAG2P55895 527 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 MESP2Q0VG99 397 aa10.88□□□□□ -0.67
SDC3-201ENST00000336798 FAM106AQ4KMX7 169 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms