RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 USF3Q68DE3 2245 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 DIDO1Q9BTC0 2240 aaKnown RBP14.01□□□□□ -0.17
DDX41-201ENST00000330503 TANC2Q9HCD6 1990 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 TRGV10A0A0A0MS01 117 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 IGSF23A1L1A6 192 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 SLC31A2O15432 143 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 P0C879 139 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 ZNF295-AS1Q8N0V1 137 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 SPAG16Q8N0X2 631 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 RNASE11Q8TAA1 199 aaKnown RBP14.01□□□□□ -0.17
DDX41-201ENST00000330503 TCTEX1D2Q8WW35 142 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 LEAP2Q969E1 77 aa14.01□□□□□ -0.17
DDX41-201ENST00000330503 NKX6-3A6NJ46 265 aa14□□□□□ -0.17
DDX41-201ENST00000330503 B8ZZF3 427 aa14□□□□□ -0.17
DDX41-201ENST00000330503 MMP9P14780 707 aa14□□□□□ -0.17
DDX41-201ENST00000330503 GPR12P47775 334 aa14□□□□□ -0.17
DDX41-201ENST00000330503 AKR1C2P52895 323 aa14□□□□□ -0.17
DDX41-201ENST00000330503 EWSR1Q01844 656 aaKnown RBP eCLIP14□□□□□ -0.17
DDX41-201ENST00000330503 ZNF816Q0VGE8 651 aaPredicted RBP14□□□□□ -0.17
DDX41-201ENST00000330503 CATR1Q13166 79 aa14□□□□□ -0.17
DDX41-201ENST00000330503 LYPD2Q6UXB3 125 aa14□□□□□ -0.17
DDX41-201ENST00000330503 C1orf229Q6ZS94 237 aaPredicted RBP14□□□□□ -0.17
DDX41-201ENST00000330503 FAM216AQ8WUB2 273 aa14□□□□□ -0.17
DDX41-201ENST00000330503 HSD17B10Q99714 261 aaKnown RBP14□□□□□ -0.17
DDX41-201ENST00000330503 ARV1Q9H2C2 271 aa14□□□□□ -0.17
DDX41-201ENST00000330503 IFI27L2Q9H2X8 130 aa14□□□□□ -0.17
DDX41-201ENST00000330503 PLA2G2EQ9NZK7 142 aa14□□□□□ -0.17
DDX41-201ENST00000330503 TMEM8BA6NDV4 472 aa14□□□□□ -0.17
DDX41-201ENST00000330503 JTBO76095 146 aa14□□□□□ -0.17
DDX41-201ENST00000330503 NDUFB7P17568 137 aa14□□□□□ -0.17
DDX41-201ENST00000330503 PVALBP20472 110 aaPredicted RBP14□□□□□ -0.17
DDX41-201ENST00000330503 CT45A1Q5HYN5 189 aa14□□□□□ -0.17
DDX41-201ENST00000330503 NCR3LG1Q68D85 454 aa14□□□□□ -0.17
DDX41-201ENST00000330503 MUC15Q8N387 334 aa14□□□□□ -0.17
DDX41-201ENST00000330503 CT45A3Q8NHU0 189 aa14□□□□□ -0.17
DDX41-201ENST00000330503 FAM212BQ9NTI7 297 aaPredicted RBP14□□□□□ -0.17
DDX41-201ENST00000330503 LYRM2Q9NU23 88 aaPredicted RBP14□□□□□ -0.17
DDX41-201ENST00000330503 SLC25A10Q9UBX3 287 aaPredicted RBP14□□□□□ -0.17
DDX41-201ENST00000330503 MMP24Q9Y5R2 645 aa14□□□□□ -0.17
DDX41-201ENST00000330503 PKD1L2Q7Z442 2459 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 ITGB1BP1O14713 200 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 MMP23AO75900 390 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 S1PR2O95136 353 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 DUTP33316 252 aaKnown RBP13.99□□□□□ -0.17
DDX41-201ENST00000330503 EIF5AP63241 154 aaKnown RBP13.99□□□□□ -0.17
DDX41-201ENST00000330503 TMEM252Q8N6L7 170 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 TCTEX1D1Q8N7M0 179 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 UBAC2Q8NBM4 344 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 IDI2-AS1Q9NZ38 188 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 PFDN2Q9UHV9 154 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 HCFC1P51610 2035 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 ANKHD1Q8IWZ3 2542 aaKnown RBP13.99□□□□□ -0.17
DDX41-201ENST00000330503 IGHV1-69-2A0A0G2JMI3 117 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 ZNF729A6NN14 1252 aaPredicted RBP13.99□□□□□ -0.17
DDX41-201ENST00000330503 KRASP01116 189 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 G6PCP35575 357 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 CAV2P51636 162 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 VAMP2P63027 116 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 RPL39P5Q59GN2 51 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 C19orf12Q9NSK7 152 aa13.99□□□□□ -0.17
DDX41-201ENST00000330503 A0A1W2PPE3 182 aa13.98□□□□□ -0.17
DDX41-201ENST00000330503 TOR2AQ5JU69 321 aa13.98□□□□□ -0.17
DDX41-201ENST00000330503 ZNF439Q8NDP4 499 aa13.98□□□□□ -0.17
DDX41-201ENST00000330503 RAB9BQ9NP90 201 aa13.98□□□□□ -0.17
DDX41-201ENST00000330503 GAB2Q9UQC2 676 aa13.98□□□□□ -0.17
DDX41-201ENST00000330503 TPRP12270 2363 aaKnown RBP13.98□□□□□ -0.17
DDX41-201ENST00000330503 hADV38S2A0JD32 116 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 I3L521 148 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 RNF141Q8WVD5 230 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 LINC00312Q9Y6C7 94 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 WRBO00258 174 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 FGF2P09038 288 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 COL8A2P25067 703 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 NFYBP25208 207 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 UQCRFS1P47985 274 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 ERVFRD-1P60508 538 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 MEF2CQ06413 473 aaPredicted RBP13.97□□□□□ -0.17
DDX41-201ENST00000330503 ZNF273Q14593 569 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 MIDNQ504T8 468 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 PRAMEF5Q5TYX0 476 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 MARVELD3Q96A59 401 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 ABHD14AQ9BUJ0 271 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 SLC25A31Q9H0C2 315 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 COA4Q9NYJ1 87 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 CTSZQ9UBR2 303 aa13.97□□□□□ -0.17
DDX41-201ENST00000330503 LYNX1G3V0Z9 82 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 M0R1X1 148 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 FBXO24O75426 580 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 LYNX1P0DP58 116 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 TMEM200BQ69YZ2 307 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 LRRC20Q8TCA0 184 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 RAB40CQ96S21 281 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 GINS3Q9BRX5 216 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 TAS2R3Q9NYW6 316 aa13.96□□□□□ -0.17
DDX41-201ENST00000330503 RPUSD1Q9UJJ7 312 aaKnown RBP13.96□□□□□ -0.17
DDX41-201ENST00000330503 SYNGR2O43760 224 aa13.96□□□□□ -0.18
DDX41-201ENST00000330503 GNLYP22749 145 aa13.96□□□□□ -0.18
DDX41-201ENST00000330503 RAB7AP51149 207 aa13.96□□□□□ -0.18
DDX41-201ENST00000330503 RPL31P62899 125 aaKnown RBP13.96□□□□□ -0.18
DDX41-201ENST00000330503 HSD17B13Q7Z5P4 300 aaPredicted RBP13.96□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms