RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CHRNA7P36544 502 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 RANBP1P43487 201 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 PSMD7P51665 324 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 OR10A3P58181 314 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 MRPS15P82914 257 aaKnown RBP15.2■□□□□ 0.02
LIME1-201ENST00000309546 FHL3Q13643 280 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 SSX1Q16384 188 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 ZNF491Q8N8L2 437 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 AGMATQ9BSE5 352 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 GHITMQ9H3K2 345 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 ZNF221Q9UK13 617 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 FBXO7Q9Y3I1 522 aa15.2■□□□□ 0.02
LIME1-201ENST00000309546 IGKV1-6A0A0C4DH72 117 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 TRDCB7Z8K6 153 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 PDCD5O14737 125 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 LDLRAD4O15165 306 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 IGLV1-40P01703 118 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 CD3GP09693 182 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 RAB9AP51151 201 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 DCTN2Q13561 401 aaKnown RBP15.19■□□□□ 0.02
LIME1-201ENST00000309546 VAX1Q5SQQ9 334 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 OR5AN1Q8NGI8 311 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 OR1N2Q8NGR9 330 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 CASTOR1Q8WTX7 329 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 CLCC1Q96S66 551 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 RDH8Q9NYR8 311 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 RAB22AQ9UL26 194 aa15.19■□□□□ 0.02
LIME1-201ENST00000309546 A0A075B6Q4 140 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 RAMP3O60896 148 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 RBBP9O75884 186 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 OR8U8P0C7N1 319 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 MYL9P24844 172 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 ECI1P42126 302 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 GNB1P62873 340 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 CX3CL1P78423 397 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 ZNF616Q08AN1 781 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 KIAA0141Q14154 515 aaPredicted RBP15.18■□□□□ 0.02
LIME1-201ENST00000309546 ZNF260Q3ZCT1 412 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 ZNF660Q6AZW8 331 aaPredicted RBP15.18■□□□□ 0.02
LIME1-201ENST00000309546 MINDY2Q8NBR6 621 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 RAB3CQ96E17 227 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 PRR25Q96S07 402 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 B9D2Q9BPU9 175 aa15.18■□□□□ 0.02
LIME1-201ENST00000309546 FAM103A1Q9BTL3 118 aaKnown RBP15.18■□□□□ 0.02
LIME1-201ENST00000309546 METTL1Q9UBP6 276 aaKnown RBP15.18■□□□□ 0.02
LIME1-201ENST00000309546 FOXA2Q9Y261 457 aaPredicted RBP15.18■□□□□ 0.02
LIME1-201ENST00000309546 SHISA3A0PJX4 238 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 I3L521 148 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 FCN1O00602 326 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 MOGAT2Q3SYC2 334 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 ASPHD1Q5U4P2 390 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 PTX4Q96A99 478 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 ALX4Q9H161 411 aaPredicted RBP15.17■□□□□ 0.02
LIME1-201ENST00000309546 NDUFB11Q9NX14 153 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 GAB2Q9UQC2 676 aa15.17■□□□□ 0.02
LIME1-201ENST00000309546 DNAH9Q9NYC9 4486 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 M0R1X1 148 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 BET1O15155 118 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 FABP7O15540 132 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 SOX15O60248 233 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 PROP1O75360 226 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 APOA2P02652 100 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 IGKV1-16P04430 117 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 TFAP2AP05549 437 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 GADD45AP24522 165 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 LINC00205P59089 165 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 RPS16P62249 146 aaKnown RBP15.16■□□□□ 0.02
LIME1-201ENST00000309546 UNQ5815/PRO19632Q6UWF5 114 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 ZNF383Q8NA42 475 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 OR4A4PQ8NGN8 299 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 MAFIPQ8WZ33 124 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 KCNK7Q9Y2U2 307 aa15.16■□□□□ 0.02
LIME1-201ENST00000309546 A0A0B4J203 849 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 TRAV1-2A0A0B4J238 106 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 IFITM5A6NNB3 132 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 CA2P00918 260 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 FCGR3AP08637 254 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 SNRPBP14678 240 aaKnown RBP15.15■□□□□ 0.02
LIME1-201ENST00000309546 GNB3P16520 340 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 RAB3BP20337 219 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 CRIP2P52943 208 aaPredicted RBP15.15■□□□□ 0.02
LIME1-201ENST00000309546 RUNX1Q01196 453 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 TMEM267Q0VDI3 215 aaPredicted RBP15.15■□□□□ 0.02
LIME1-201ENST00000309546 PSG5Q15238 335 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 C19orf54Q5BKX5 351 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 IGSF11Q5DX21 431 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 C22orf42Q6IC83 251 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 PPP1R27Q86WC6 154 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 PDPNQ86YL7 162 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 TCTEX1D1Q8N7M0 179 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 OR10R2Q8NGX6 335 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 TSNAXQ99598 290 aaKnown RBP15.15■□□□□ 0.02
LIME1-201ENST00000309546 RNF5Q99942 180 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 OR2D2Q9H210 308 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 SCOCQ9UIL1 159 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 RAB26Q9ULW5 256 aa15.15■□□□□ 0.02
LIME1-201ENST00000309546 TRDV1A0A1B0GX56 115 aa15.14■□□□□ 0.01
LIME1-201ENST00000309546 SMIM30A4D0T7 59 aa15.14■□□□□ 0.01
LIME1-201ENST00000309546 EGR2P11161 476 aaPredicted RBP15.14■□□□□ 0.01
LIME1-201ENST00000309546 SERPINB10P48595 397 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms