RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 RBFOX3A6NFN3 312 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 LRRC30A6NM36 301 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 LINC00473A8K010 186 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 GATA4P43694 442 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 SELENOVP59797 346 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 AKIRIN2Q53H80 203 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 ABHD17AQ96GS6 310 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 RARRES2Q99969 163 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 CTNNBIP1Q9NSA3 81 aaPredicted RBP19.95■□□□□ 0.78
TRIM54-201ENST00000296098 AKAP13Q12802 2813 aa19.95■□□□□ 0.78
TRIM54-201ENST00000296098 CCKARP32238 428 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 GPR12P47775 334 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 AWAT1Q58HT5 328 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 ZNRF1Q8ND25 227 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 FAM216AQ8WUB2 273 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 PSMG3Q9BT73 122 aaPredicted RBP19.94■□□□□ 0.78
TRIM54-201ENST00000296098 RSG1Q9BU20 258 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 HIPK2Q9H2X6 1198 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 TP53TG5Q9Y2B4 290 aa19.94■□□□□ 0.78
TRIM54-201ENST00000296098 RAB29O14966 203 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 HBE1P02100 147 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 CD40P25942 277 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 RAB2AP61019 212 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 FLI1Q01543 452 aaPredicted RBP19.93■□□□□ 0.78
TRIM54-201ENST00000296098 CR1LQ2VPA4 569 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 SP5Q6BEB4 398 aaPredicted RBP19.93■□□□□ 0.78
TRIM54-201ENST00000296098 TMEM14EPQ6UXP3 125 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 SFT2D1Q8WV19 159 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 SMCO4Q9NRQ5 59 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 PRRG2O14669 202 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 PPIHO43447 177 aaKnown RBP19.93■□□□□ 0.78
TRIM54-201ENST00000296098 OR8U8P0C7N1 319 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 CTRB1P17538 263 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 TDGF1P3P51864 188 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 EDDM3BP56851 147 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 LRRC75BQ2VPJ9 315 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 CTRB2Q6GPI1 263 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 C22orf34Q6ZV56 151 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 H2BFWTQ7Z2G1 175 aa19.93■□□□□ 0.78
TRIM54-201ENST00000296098 PARD6GQ9BYG4 376 aaPredicted RBP19.93■□□□□ 0.78
TRIM54-201ENST00000296098 OR13C7P0DN81 318 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 SLC38A11Q08AI6 406 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 MORN2Q502X0 79 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 ETV3LQ6ZN32 361 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 MRGPRGQ86SM5 289 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 RBMXL1Q96E39 390 aaKnown RBP19.92■□□□□ 0.78
TRIM54-201ENST00000296098 C14orf79Q96F83 325 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 RPS10P5Q9NQ39 176 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 YPEL1O60688 119 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 TNFAIP6P98066 277 aaPredicted RBP19.92■□□□□ 0.78
TRIM54-201ENST00000296098 DOLPP1Q86YN1 238 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 CD300LFQ8TDQ1 290 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 YPEL2Q96QA6 119 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 LRFN3Q9BTN0 628 aa19.92■□□□□ 0.78
TRIM54-201ENST00000296098 M0R036 132 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 F2RL2O00254 374 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 IGHV1-46P01743 117 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 LINC00205P59089 165 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 FAM222BQ8WU58 562 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 WDR61Q9GZS3 305 aaKnown RBP19.91■□□□□ 0.78
TRIM54-201ENST00000296098 OR6C3Q9NZP0 311 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 RNF7Q9UBF6 113 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 CLN8Q9UBY8 286 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 IL19Q9UHD0 177 aa19.91■□□□□ 0.78
TRIM54-201ENST00000296098 A0A0G2JNJ9 132 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 HAGHQ16775 308 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 OR8G2PQ6IF36 304 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 PLPPR2Q96GM1 343 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 OR4C12Q96R67 309 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 Q9UFV3 132 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 MLXQ9UH92 298 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 GVINP1Q7Z2Y8 2422 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 UBE2L5PA0A1B0GUS4 154 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 MARCH11A6NNE9 402 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 SNRNP70P08621 437 aaKnown RBP19.9■□□□□ 0.78
TRIM54-201ENST00000296098 DUTP33316 252 aaKnown RBP19.9■□□□□ 0.78
TRIM54-201ENST00000296098 AKR1C3P42330 323 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 LOXL3P58215 753 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 FAM201AQ5SY85 155 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 ASCL5Q7RTU5 278 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 ZNF561Q8N587 486 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 NUP37Q8NFH4 326 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 DTD1Q8TEA8 209 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 GCM1Q9NP62 436 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 CALYQ9NYX4 217 aa19.9■□□□□ 0.78
TRIM54-201ENST00000296098 USF3Q68DE3 2245 aa19.89■□□□□ 0.78
TRIM54-201ENST00000296098 BOD1L1Q8NFC6 3051 aa19.89■□□□□ 0.78
TRIM54-201ENST00000296098 MUC6Q6W4X9 2439 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 CEP250Q9BV73 2442 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 CADP27708 2225 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 CACNA1DQ01668 2161 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 TRAV1-1A0A0B4J248 108 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 C7orf77A4D0Y5 90 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 TNFSF4P23510 183 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 PAX6P26367 422 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 SOHLH1Q5JUK2 328 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 ZNF506Q5JVG8 444 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 NCR3LG1Q68D85 454 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 RXFP4Q8TDU9 374 aa19.89■□□□□ 0.77
TRIM54-201ENST00000296098 NCOR1P1Q9H4R4 102 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms