RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 RBM11P57052 281 aaKnown RBP4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CD226Q15762 336 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CEACAM16Q2WEN9 425 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 C2orf27AQ580R0 203 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 C1QL3Q5VWW1 255 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 KLHDC7BQ96G42 594 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 OR8B2Q96RD0 313 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 C19orf24Q9BVV8 132 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 SAP30LQ9HAJ7 183 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 SLC17A4Q9Y2C5 497 aa4.96□□□□□ -1.62
SCN1A-216ENST00000637968 CACNA1CQ13936 2221 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 A1L4Q6 167 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 DNPH1O43598 174 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 SYNGR1O43759 233 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 STC2O76061 302 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 APOMO95445 188 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 TAS2R45P59539 299 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 YPEL3P61236 119 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 FOXF1Q12946 379 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 GAGE2BQ13066 116 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 GAGE2EQ4V326 116 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 STPG1Q5TH74 334 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 BRICD5Q6PL45 260 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 OR2I1PQ8NGU4 316 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 ADTRPQ96IZ2 230 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 IL36BQ9NZH7 164 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 GAGE2DQ9UEU5 116 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 ITGB4P16144 1822 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 A0A1B0GWA3 101 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 CRYM-AS1A6NIL9 109 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 SHISA8B8ZZ34 492 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 HHLA1C9JL84 531 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 H3BP45 60 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 CLDN2P57739 230 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 RPL15P61313 204 aaKnown RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 KIR3DS1Q14943 382 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 ABHD17CQ6PCB6 329 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 WDR5BQ86VZ2 330 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 OR4A16Q8NH70 328 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 CLEC7AQ9BXN2 247 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 PNRC2Q9NPJ4 139 aaKnown RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 ANXA10Q9UJ72 324 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 EMC9Q9Y3B6 208 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 PTPRZ1P23471 2315 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 URB1O60287 2271 aaKnown RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 M0QXV9 152 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 LEPROTL1O95214 131 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 TSPAN13O95857 204 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 CEACAM5P06731 702 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 SLC25A6P12236 298 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 CRYBB3P26998 211 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 HES1Q14469 280 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 TIGITQ495A1 244 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 ZNF585BQ52M93 769 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 OTPQ5XKR4 325 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 SHISA6Q6ZSJ9 500 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 C8orf86Q6ZUL3 223 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 NEGR1Q7Z3B1 354 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 FAM174AQ8TBP5 190 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 ABHD14BQ96IU4 210 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 RAB40CQ96S21 281 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 C1QTNF4Q9BXJ3 329 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 RLFQ13129 1914 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 IGKV6-21A0A0C4DH24 114 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 hADV38S2A0JD32 116 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 TMEM262E9PQX1 116 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 F8W1H4 67 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 YPEL1O60688 119 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 CPMP14384 443 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 SUPT4H1P63272 117 aaKnown RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 C1orf140Q5VVS0 124 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 TPRG1Q6ZUI0 275 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 SSX8Q7RTT4 187 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 ZIC4Q8N9L1 334 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 OR10G9Q8NGN4 311 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 OR10G7Q8NGN6 311 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 LSM10Q969L4 123 aaKnown RBP4.95□□□□□ -1.62
SCN1A-216ENST00000637968 YPEL2Q96QA6 119 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 GGTLC1Q9BX51 225 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 CHRNA10Q9GZZ6 450 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 TAC3Q9UHF0 121 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 KCNE3Q9Y6H6 103 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 DOCK5Q9H7D0 1870 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 SCN1AP35498 2009 aa4.95□□□□□ -1.62
SCN1A-216ENST00000637968 A0A1W2PPM0 123 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 METTL12A8MUP2 240 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 UPK3AO75631 287 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 KLF7O75840 302 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-216ENST00000637968 SRD5A2P31213 254 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 EMC4Q5J8M3 183 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 PTH2Q96A98 100 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 ARHGAP5-AS1Q96IT6 56 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 NDFIP1Q9BT67 221 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-216ENST00000637968 LOC102725191A0A1B0GVB3 256 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 PLPP1O14494 284 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 KIR2DL2P43627 348 aaPredicted RBP4.94□□□□□ -1.62
SCN1A-216ENST00000637968 GAGE13Q4V321 117 aa4.94□□□□□ -1.62
SCN1A-216ENST00000637968 LYRM7Q5U5X0 104 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms