RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 HOGA1Q86XE5 327 aa16.28■□□□□ 0.2
PTCD3-220ENST00000627371 THNSL2Q86YJ6 484 aa16.28■□□□□ 0.2
PTCD3-220ENST00000627371 GVQW1Q8N7I0 195 aa16.28■□□□□ 0.2
PTCD3-220ENST00000627371 BEST4Q8NFU0 473 aa16.28■□□□□ 0.2
PTCD3-220ENST00000627371 GINS4Q9BRT9 223 aa16.28■□□□□ 0.2
PTCD3-220ENST00000627371 SLIRPQ9GZT3 109 aaKnown RBP16.28■□□□□ 0.2
PTCD3-220ENST00000627371 GHITMQ9H3K2 345 aa16.28■□□□□ 0.2
PTCD3-220ENST00000627371 PIPOXQ9P0Z9 390 aa16.28■□□□□ 0.2
PTCD3-220ENST00000627371 RAB29O14966 203 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 CTXN2P0C2S0 81 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 FAM106CPP0CH98 169 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 RAG2P55895 527 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 FOXL1Q12952 345 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 FBLN7Q53RD9 439 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 CNIH2Q6PI25 160 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 MOB3BQ86TA1 216 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 CAPSLQ8WWF8 208 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 MIXL1Q9H2W2 232 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 EXTL2Q9UBQ6 330 aa16.27■□□□□ 0.2
PTCD3-220ENST00000627371 MRPS7Q9Y2R9 242 aaKnown RBP16.27■□□□□ 0.2
PTCD3-220ENST00000627371 MEIS3P1A6NDR6 274 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 CTDSP2O14595 271 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 RGS5O15539 181 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 SNRNP70P08621 437 aaKnown RBP16.26■□□□□ 0.19
PTCD3-220ENST00000627371 PRSS3P35030 304 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 OR3A3P47888 321 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 C16orf82Q7Z2V1 217 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 LAX1Q8IWV1 398 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 H1FOOQ8IZA3 346 aaPredicted RBP16.26■□□□□ 0.19
PTCD3-220ENST00000627371 OR4F5Q8NH21 305 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 ABHD14BQ96IU4 210 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 ADAM30Q9UKF2 790 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 ANAPC10Q9UM13 185 aa16.26■□□□□ 0.19
PTCD3-220ENST00000627371 STAB1Q9NY15 2570 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 TSPAN9O75954 239 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 IGKV1D-33P01593 117 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 IGKV1-33P01594 117 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 AWAT1Q58HT5 328 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 Q6ZSV7 163 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 SNX29P2Q8IUI4 249 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 SNAPC3Q92966 411 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 RBM14Q96PK6 669 aaKnown RBP16.25■□□□□ 0.19
PTCD3-220ENST00000627371 S1PR3Q99500 378 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 ZNF251Q9BRH9 671 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 SLC25A33Q9BSK2 321 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 NPFFR1Q9GZQ6 430 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 RANBP3Q9H6Z4 567 aaPredicted RBP16.25■□□□□ 0.19
PTCD3-220ENST00000627371 IFT46Q9NQC8 304 aa16.25■□□□□ 0.19
PTCD3-220ENST00000627371 IGHV3-72A0A0B4J1Y9 119 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 TPPPO94811 219 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 OR2F2O95006 317 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 CD1BP29016 333 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 ARPC4P59998 168 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 LSAMPQ13449 338 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 EBI3Q14213 229 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 RPL39P5Q59GN2 51 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 SPATA3Q8NHX4 192 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 GPX8Q8TED1 209 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 AKR1E2Q96JD6 320 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 MRPL20Q9BYC9 149 aaKnown RBP16.24■□□□□ 0.19
PTCD3-220ENST00000627371 C6orf62Q9GZU0 229 aaPredicted RBP16.24■□□□□ 0.19
PTCD3-220ENST00000627371 NXF2Q9GZY0 626 aaKnown RBP16.24■□□□□ 0.19
PTCD3-220ENST00000627371 SCPEP1Q9HB40 452 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 MMP24Q9Y5R2 645 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 DNHD1Q96M86 4753 aa16.24■□□□□ 0.19
PTCD3-220ENST00000627371 TMEM11P17152 192 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 MDKP21741 143 aaPredicted RBP16.23■□□□□ 0.19
PTCD3-220ENST00000627371 GPR12P47775 334 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 HES1Q14469 280 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 OR4C13Q8NGP0 309 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 MCFD2Q8NI22 146 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 NABP2Q9BQ15 211 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 DCUN1D5Q9BTE7 237 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 OR2D2Q9H210 308 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 C16orf95Q9H693 158 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 NDUFA13Q9P0J0 144 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 ZNF221Q9UK13 617 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 RNF150Q9ULK6 438 aa16.23■□□□□ 0.19
PTCD3-220ENST00000627371 ANK2Q01484 3957 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 TENM1Q9UKZ4 2725 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 A0A1B0GUS0 222 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 ZNF736B4DX44 427 aaPredicted RBP16.22■□□□□ 0.19
PTCD3-220ENST00000627371 SULT1C2O00338 296 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 FCER2P06734 321 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 OR8U9P0C7N5 309 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 NAT1P18440 290 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 C12orf54Q6X4T0 127 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.22■□□□□ 0.19
PTCD3-220ENST00000627371 OR5AP2Q8NGF4 316 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 OR8U1Q8NH10 309 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 C15orf40Q8WUR7 153 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 EAF1Q96JC9 268 aaPredicted RBP16.22■□□□□ 0.19
PTCD3-220ENST00000627371 BEX1Q9HBH7 125 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 NECAP2Q9NVZ3 263 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 GAB2Q9UQC2 676 aa16.22■□□□□ 0.19
PTCD3-220ENST00000627371 NFYAP23511 347 aaPredicted RBP16.21■□□□□ 0.19
PTCD3-220ENST00000627371 Q8N6K4 173 aa16.21■□□□□ 0.19
PTCD3-220ENST00000627371 OR2T10Q8NGZ9 312 aa16.21■□□□□ 0.19
PTCD3-220ENST00000627371 LINC01006Q8NI28 216 aa16.21■□□□□ 0.19
PTCD3-220ENST00000627371 MOB4Q9Y3A3 225 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms