RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 CDCP2Q5VXM1 449 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 OR8I2Q8N0Y5 310 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 BATF2Q8N1L9 274 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 OR2M3Q8NG83 312 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 MSI2Q96DH6 328 aaKnown RBP6.79□□□□□ -1.32
VPS11-209ENST00000622309 SCNM1Q9BWG6 230 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 TMEM38BQ9NVV0 291 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 PILRBQ9UKJ0 227 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 UBE2J1Q9Y385 318 aaPredicted RBP6.79□□□□□ -1.32
VPS11-209ENST00000622309 OR1A2Q9Y585 309 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 SDK1Q7Z5N4 2213 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 FANCMQ8IYD8 2048 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 SCN3AQ9NY46 2000 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 TRANK1O15050 2925 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 IGKV1D-8A0A087WSZ0 117 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 TRAV9-2A0A087WT02 112 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 MDFIC2A0A1B0GVS7 189 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 C17orf112F2Z3M2 114 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 S1PR2O95136 353 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 OR10J4P0C629 311 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 NTF3P20783 257 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 OTX1P32242 354 aaPredicted RBP6.79□□□□□ -1.32
VPS11-209ENST00000622309 OPRM1P35372 400 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 FOXL2P58012 376 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 ARG2P78540 354 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 RELBQ01201 579 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 PSG3Q16557 428 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 SRSF7Q16629 238 aaKnown RBP eCLIP6.79□□□□□ -1.32
VPS11-209ENST00000622309 C12orf54Q6X4T0 127 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 YRDCQ86U90 279 aaKnown RBP6.79□□□□□ -1.32
VPS11-209ENST00000622309 DEFB125Q8N687 156 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 OR4F17Q8NGA8 305 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 SFRP2Q96HF1 295 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 ASCL2Q99929 193 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 CHRDL1Q9BU40 450 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 UBE2ZQ9H832 354 aaPredicted RBP6.79□□□□□ -1.32
VPS11-209ENST00000622309 HS3ST2Q9Y278 367 aa6.79□□□□□ -1.32
VPS11-209ENST00000622309 LOC101059948A0A1B0GTJ6 334 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 HCRTR1O43613 425 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 CHST1O43916 411 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 LINC00271P0C7V0 271 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 IGLC1P0CG04 106 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 PPIAL4GP0DN37 164 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 CCNOP22674 350 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 ZNF133P52736 654 aaPredicted RBP6.78□□□□□ -1.32
VPS11-209ENST00000622309 COLCA1Q6ZS62 124 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 NEIL1Q96FI4 390 aaPredicted RBP6.78□□□□□ -1.32
VPS11-209ENST00000622309 C1orf43Q9BWL3 253 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 NECAP2Q9NVZ3 263 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 THAP10Q9P2Z0 257 aaPredicted RBP6.78□□□□□ -1.32
VPS11-209ENST00000622309 EML5Q05BV3 1969 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 OBSL1O75147 1896 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 IGKV1-8A0A0C4DH67 115 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 SHISA7A6NL88 538 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 K7EQM0 130 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 ZNF205O95201 554 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 ERGP11308 486 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 WASP42768 502 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 ZNF547Q8IVP9 402 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 OR1K1Q8NGR3 316 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 WDR61Q9GZS3 305 aaKnown RBP6.78□□□□□ -1.32
VPS11-209ENST00000622309 C11orf1Q9H5F2 150 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 PLEKHJ1Q9NW61 149 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 ANXA10Q9UJ72 324 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 TSSC4Q9Y5U2 329 aaPredicted RBP6.78□□□□□ -1.32
VPS11-209ENST00000622309 F5P12259 2224 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 IGKV1D-42A0A075B6H8 117 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 MUC21A0A0G2JKD1 596 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 MUC21A0A140T8X8 626 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 SERINC4A6NH21 518 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 H3BP45 60 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 SIRPB1O00241 398 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 HMGB3O15347 200 aaKnown RBP6.78□□□□□ -1.32
VPS11-209ENST00000622309 TUSC2O75896 110 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 WNT2P09544 360 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 PLP1P60201 277 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 FAM53BQ14153 422 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 MUC21Q5SSG8 566 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 RNF144BQ7Z419 303 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 UEVLDQ8IX04 471 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 LMLNQ96KR4 655 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 MOB1AQ9H8S9 216 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 WNT16Q9UBV4 365 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 MMP17Q9ULZ9 603 aa6.78□□□□□ -1.32
VPS11-209ENST00000622309 TRAV8-6A0A0B4J262 113 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 J3QR06 171 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 GPR6P46095 362 aaPredicted RBP6.77□□□□□ -1.33
VPS11-209ENST00000622309 SERF2P84101 59 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 VN1R2Q8NFZ6 395 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 OR2AE1Q8NHA4 323 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 KCNS1Q96KK3 526 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 SIGLEC12Q96PQ1 595 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 RTN4RQ9BZR6 473 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 FOXQ1Q9C009 403 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 RAB1BQ9H0U4 201 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 GNB4Q9HAV0 340 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 MBNL1Q9NR56 388 aaKnown RBP6.77□□□□□ -1.33
VPS11-209ENST00000622309 SELENOKQ9Y6D0 94 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 MUC6Q6W4X9 2439 aa6.77□□□□□ -1.33
VPS11-209ENST00000622309 PLXNA2O75051 1894 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms